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Protein Overview: PCS1L_ARATH

General Information:
Name(s) found: PCS1L_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 453 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IDA]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    programmed cell death [IMP]
    Molecular Function: aspartic-type endopeptidase activity [ISS]
    peptidase activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRFHALFL LLVLSVRTYK CVSSSSSSSS SFSFSSFSSS SSSQTLVLPL KTRITPTDHR  60
   61 PTDKLHFHHN VTLTVTLTVG TPPQNISMVI DTGSELSWLR CNRSSNPNPV NNFDPTRSSS 120
  121 YSPIPCSSPT CRTRTRDFLI PASCDSDKLC HATLSYADAS SSEGNLAAEI FHFGNSTNDS 180
  181 NLIFGCMGSV SGSDPEEDTK TTGLLGMNRG SLSFISQMGF PKFSYCISGT DDFPGFLLLG 240
  241 DSNFTWLTPL NYTPLIRIST PLPYFDRVAY TVQLTGIKVN GKLLPIPKSV LVPDHTGAGQ 300
  301 TMVDSGTQFT FLLGPVYTAL RSHFLNRTNG ILTVYEDPDF VFQGTMDLCY RISPVRIRSG 360
  361 ILHRLPTVSL VFEGAEIAVS GQPLLYRVPH LTVGNDSVYC FTFGNSDLMG MEAYVIGHHH 420
  421 QQNMWIEFDL QRSRIGLAPV ECDVSGQRLG IGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..453] PSI-BLAST 73.30103 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle