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Protein Overview: gi|15234170, gi|...

General Information:
Name(s) found: gi|7267637 [NCBI NR]
gi|25407104 [NCBI NR]
gi|15234170 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|7267637|emb|CAB80949.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C85018 hypothetical protein AT4g01400 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15234170|ref|NP_192049.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1117 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRPIYDFA AVFRHLTSPL STSSRFLFYS SSEHEARKPI VSNPKSPIGS PTRVQKLIAS  60
   61 QSDPLLAKEI FDYASQQPNF RHSRSSHLIL ILKLGRGRYF NLIDDVLAKH RSSGYPLTGE 120
  121 IFTYLIKVYA EAKLPEKVLS TFYKMLEFNF TPQPKHLNRI LDVLVSHRGY LQKAFELFKS 180
  181 SRLHGVMPNT RSYNLLMQAF CLNDDLSIAY QLFGKMLERD VVPDVDSYKI LIQGFCRKGQ 240
  241 VNGAMELLDD MLNKGFVPDR TLIGGLCDQG MFDEGKKYLE EMISKGFSPH FSVSNCLVKG 300
  301 FCSFGKVEEA CDVVEVVMKN GETLHSDTWE MVIPLICNED ESEKIKLFLE DAVKEEITGD 360
  361 TRIVDVGIGL GSYLSKNKKM PEIEQDDAAA ETVDSSTVKF GTPEALEYVR SLTDVGAMTR 420
  421 LLHECIAYQR SLDSDLDTLL SQRTELDRNL VQLQRSAEIL DIVKADADHM LGNVRSTCDL 480
  481 ADQVSGKVRE LDLAQSRVNV TLSRIDAIVE RGNCIEGVKT ALESEDYESA AKFVQRFLQI 540
  541 DLQYKDSGSD QSEQLHASKE QLEGIAKKKL LAAIDQRDHP TILRFVRLYS PLGMETEGLQ 600
  601 LYVGYLKKVI ALRGRMEYEN VVELMEQGLG QVNFVGCLTN LFKDIVMAIE ENDEILRGLC 660
  661 GEDGVAYAIC ELQEECDLRG SLILKKYMDF RKLAILASDI NNSPNLNILP GGASEGPDPR 720
  721 EVELYVEEIL SLMQLGEDYT EFMVSKIKSL TSVDPELLPT ATKAFRNKSF SKAIQDVTRY 780
  781 YVILEGFFMV ENVRKAIRID EHVPDSLTTS MVDDVFYVLQ SCLRRAISTS NISSVIAVLS 840
  841 YAGSLLGNDY HEALQQKIRE PNLGARLFLG GIGVENTGTE IATALNNMDV SCEYILKLKH 900
  901 EIEEQCTEVF PAPADRERIK SCLSELGELS STFKQLLNSG MEQLVATVTP RIRPVLDTVA 960
  961 TISYELTETE YAENEVNDPW VQRLLHSVET NAAWLQPLMT SNNYDSFLHL IIDFIVKRLE1020
 1021 VIMMQKRFSQ LGGLQLDRDT RALVSHFSGM TQRTVRDKFA RLTQMATILN LEKVSEILDF1080
 1081 WGENSGPMTW RLTPAEVRRV LGLRVEFKPE SIAALKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..434] PSI-BLAST 20.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [435..549] deduced N/A No confident structure predictions are available.
    3 View Details [550..713] deduced N/A No confident structure predictions are available.
    4 View Details [714..1117] FFAS03 1.57 No description for 2fji1 was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.71974493738804 bayes_pls_golite062009
  • protein binding
    		•  1.6279032205159 bayes_pls_golite062009
  • signal sequence binding
    		•  1.13935627118933 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.584434683111562 bayes_pls_golite062009
  • DNA binding
    		•  0.31557320489611 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29339620716015 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  0.158175726439206 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle