| Protein: | gi|15234170, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1117 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15234170, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
663.0 | [0..399] | [1117..20] |
|
Region A: Residues: [1-434] |
1 11 21 31 41 51
| | | | | |
1 MIRRPIYDFA AVFRHLTSPL STSSRFLFYS SSEHEARKPI VSNPKSPIGS PTRVQKLIAS 60
61 QSDPLLAKEI FDYASQQPNF RHSRSSHLIL ILKLGRGRYF NLIDDVLAKH RSSGYPLTGE 120
121 IFTYLIKVYA EAKLPEKVLS TFYKMLEFNF TPQPKHLNRI LDVLVSHRGY LQKAFELFKS 180
181 SRLHGVMPNT RSYNLLMQAF CLNDDLSIAY QLFGKMLERD VVPDVDSYKI LIQGFCRKGQ 240
241 VNGAMELLDD MLNKGFVPDR TLIGGLCDQG MFDEGKKYLE EMISKGFSPH FSVSNCLVKG 300
301 FCSFGKVEEA CDVVEVVMKN GETLHSDTWE MVIPLICNED ESEKIKLFLE DAVKEEITGD 360
361 TRIVDVGIGL GSYLSKNKKM PEIEQDDAAA ETVDSSTVKF GTPEALEYVR SLTDVGAMTR 420
421 LLHECIAYQR SLDS
|
| Detection Method: |  |
| Confidence: | 20.69897 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.71974493738804 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| signal sequence binding | 1.13935627118933 | bayes_pls_golite062009 |
| transcription regulator activity | 0.584434683111562 | bayes_pls_golite062009 |
| DNA binding | 0.31557320489611 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29339620716015 | bayes_pls_golite062009 |
| peroxisome targeting sequence binding | 0.158175726439206 | bayes_pls_golite062009 |
|
Region A: Residues: [435-549] |
1 11 21 31 41 51
| | | | | |
1 DLDTLLSQRT ELDRNLVQLQ RSAEILDIVK ADADHMLGNV RSTCDLADQV SGKVRELDLA 60
61 QSRVNVTLSR IDAIVERGNC IEGVKTALES EDYESAAKFV QRFLQIDLQY KDSGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [550-713] |
1 11 21 31 41 51
| | | | | |
1 DQSEQLHASK EQLEGIAKKK LLAAIDQRDH PTILRFVRLY SPLGMETEGL QLYVGYLKKV 60
61 IALRGRMEYE NVVELMEQGL GQVNFVGCLT NLFKDIVMAI EENDEILRGL CGEDGVAYAI 120
121 CELQEECDLR GSLILKKYMD FRKLAILASD INNSPNLNIL PGGA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [714-1117] |
1 11 21 31 41 51
| | | | | |
1 SEGPDPREVE LYVEEILSLM QLGEDYTEFM VSKIKSLTSV DPELLPTATK AFRNKSFSKA 60
61 IQDVTRYYVI LEGFFMVENV RKAIRIDEHV PDSLTTSMVD DVFYVLQSCL RRAISTSNIS 120
121 SVIAVLSYAG SLLGNDYHEA LQQKIREPNL GARLFLGGIG VENTGTEIAT ALNNMDVSCE 180
181 YILKLKHEIE EQCTEVFPAP ADRERIKSCL SELGELSSTF KQLLNSGMEQ LVATVTPRIR 240
241 PVLDTVATIS YELTETEYAE NEVNDPWVQR LLHSVETNAA WLQPLMTSNN YDSFLHLIID 300
301 FIVKRLEVIM MQKRFSQLGG LQLDRDTRAL VSHFSGMTQR TVRDKFARLT QMATILNLEK 360
361 VSEILDFWGE NSGPMTWRLT PAEVRRVLGL RVEFKPESIA ALKL
|
| Detection Method: | |
| Confidence: | 1.57 |
| Match: | 2fji1 |
| Description: | No description for 2fji1 was found. |
