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Protein Overview: gi|30681303, gi|...

General Information:
Name(s) found: gi|30681303 [NCBI NR]
gi|12322790 [NCBI NR]
Description(s) found:
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  • gi|30681303|ref|NP_850553.1| sporulation protein-related [Arabidopsis thaliana] [NCBI NR]
  • gi|12322790|gb|AAG51387.1|AC011560_19 unknown protein; 108050-105786 [Arabidopsis thaliana] [NCBI NR]
  • (Q9CAE6) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein; 108050-105786 [Arabidopsis thaliana]gi|30681303|ref|NP_850553.1| sporulation protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Sporulation protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | sporulation protein-related | chr3:3239312-3241576 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein; 108050-105786 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SPD1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3239307-3241571 FORWARD LENGTH=547 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • P-loop containing nucleoside triphosphate hydrolase family protein OS=Arabidopsis thaliana GN=F13M14.30 PE=4 SV=1 [ARATH-contam.fasta]
  • Isoform of F4J3R7, Protein seedling plastid development 1 OS=Arabidopsis thaliana GN=F13M14.30 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 547 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    nucleoside-triphosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALNSRLVL IDINSSWQAS RRLISATATA FSSDSSSSFR RTRGARQRIA SSKSPASSPS  60
   61 PVRRPSDGFS FDVRSPSSDS SISSRKSPTT APPTVELDAF LEILPPATRK ELVKHEAIEE 120
  121 LIEVVMDLGR KPLARFPSGD WVISEQPVTH QDLELAVSKV GDFSDDNRSG IDRSLHRISA 180
  181 IRNRKLQVIG LTCRVGRVVS GSAEIIRDLI EGGGSILVIG SPGVGKTTLI REIARMLADE 240
  241 HRKRVVIVDT SNEIGGDGDV PHSGIGRARR MQVPNVNLQH DVMIEAVENH MPETIIIDEI 300
  301 GTELEALAAS TIAQRGVQLV ATAHGMTIDN IIKNPSLQIL IGGIESVTLG DEEARKRKVQ 360
  361 KTILERKGPP TFTCAVEMIS RTECRVHQRL DVTVDAILAG KSAPFEIRQI RGEDDVPHKL 420
  421 VTPIPLENLE EEPAPLLNRD FVSELLSDDE DEDFLLIRSN KARSNTYTSP RSSPVHVYTY 480
  481 NVLEADLLQV AEVMGLDDEI EVTDDVGEAD VILASSSELK QNSSIRRVAK LHKLPIFVIK 540
  541 VSFFLHG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..547] PSI-BLAST 66.39794 Crystal Structure Analysis of ClpB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.868980401898271 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.44519090256852 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.4299740978009 bayes_pls_golite062009
  • nucleotide binding
    		•  0.42981506607045 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.42952677891159 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle