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View Structure Prediction Details

Protein: gi|30681303, gi|...
Organism: Arabidopsis thaliana
Length: 547 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30681303, gi|....

Description E-value Query
Range
Subject
Range
gi|30681308 - gi|30681308|ref|NP_566373.2| sporulation protein-related [Arabidopsis thaliana]
310.0 [0..1] [546..1]

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Predicted Domain #1
Region A:
Residues: [1-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALNSRLVL IDINSSWQAS RRLISATATA FSSDSSSSFR RTRGARQRIA SSKSPASSPS  60
   61 PVRRPSDGFS FDVRSPSSDS SISSRKSPTT APPTVELDAF LEILPPATRK ELVKHEAIEE 120
  121 LIEVVMDLGR KPLARFPSGD WVISEQPVTH QDLELAVSKV GDFSDDNRSG IDRSLHRISA 180
  181 IRNRKLQVIG LTCRVGRVVS GSAEIIRDLI EGGGSILVIG SPGVGKTTLI REIARMLADE 240
  241 HRKRVVIVDT SNEIGGDGDV PHSGIGRARR MQVPNVNLQH DVMIEAVENH MPETIIIDEI 300
  301 GTELEALAAS TIAQRGVQLV ATAHGMTIDN IIKNPSLQIL IGGIESVTLG DEEARKRKVQ 360
  361 KTILERKGPP TFTCAVEMIS RTECRVHQRL DVTVDAILAG KSAPFEIRQI RGEDDVPHKL 420
  421 VTPIPLENLE EEPAPLLNRD FVSELLSDDE DEDFLLIRSN KARSNTYTSP RSSPVHVYTY 480
  481 NVLEADLLQV AEVMGLDDEI EVTDDVGEAD VILASSSELK QNSSIRRVAK LHKLPIFVIK 540
  541 VSFFLHG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.39794
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.868980401898271 bayes_pls_golite062009
purine nucleotide binding 0.44519090256852 bayes_pls_golite062009
purine ribonucleotide binding 0.4299740978009 bayes_pls_golite062009
nucleotide binding 0.42981506607045 bayes_pls_golite062009
ribonucleotide binding 0.42952677891159 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle