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Protein Overview: TSPO_ARATH

General Information:
Name(s) found: TSPO_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3738290|gb|AAC63632.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C84919 hypothetical protein At2g47770 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|19310783|gb|AAL85122.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18407444|ref|NP_566110.1| benzodiazepine receptor-related [Arabidopsis thaliana] [NCBI NR]
  • gi|16226870|gb|AAL16286.1|AF428356_1 At2g47770/F17A22.16 [Arabidopsis thaliana] [NCBI NR]
  • gi|15028357|gb|AAK76655.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1 [Swiss-Prot]
  • (O82245) At2g47770 protein (At2g47770/F17A22.16) (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|15028357|gb|AAK76655.1| unknown protein [Arabidopsis thaliana]gi|3738290|gb|AAC63632.1| expressed protein [Arabidopsis thaliana]gi|16226870|gb|AAL16286.1| At2g47770/F17A22.16 [Arabidopsis thaliana]gi|25409059|p [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Benzodiazepine receptor-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | benzodiazepine receptor-related | chr2:19575771-19576361 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g47770/F17A22.16 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATTSPO, TSPO | TSPO(outer membrane tryptophan-rich sensory protein)-related | chr2:19568701-19569291 FORWARD LENGTH=196 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 196 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    endoplasmic reticulum [IDA]
    Golgi stack [IDA]
    Biological Process: response to abscisic acid stimulus [IEP]
    response to salt stress [IEP]
    response to osmotic stress [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV  60
   61 TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL MGLAAWLVWV DGGFHKKPNA 120
  121 LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL 180
  181 AWAAFVAAVN VKLAVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] Pfam 4.79588 No description for PF03073.6 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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