YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSPO_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV  60
   61 TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL MGLAAWLVWV DGGFHKKPNA 120
  121 LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL 180
  181 AWAAFVAAVN VKLAVA

Type	Start	End	Confidence
Cytoplasmic	1	48	0.96
Transmembrane Helix	49	68	0.96
Non-Cytoplasmic	69	87	0.92
Transmembrane Helix	88	110	0.95
Cytoplasmic	111	119	0.93
Transmembrane Helix	120	138	0.89
Non-Cytoplasmic	139	144	0.67
Transmembrane Helix	145	165	0.75
Cytoplasmic	166	173	0.69
Transmembrane Helix	174	194	0.65
Non-Cytoplasmic	195	196	0.51