YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SIGF_ARATH

General Information:
Name(s) found: SIGF_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 547 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    positive regulation of transcription [IMP]
    transcription initiation [TAS]
    Molecular Function: DNA binding [ISS]
    sigma factor activity [ISS]
    transcription factor activity [ISS]
    DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS  60
   61 QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK FEQQLLHSTG LWNLLISPLT 120
  121 SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS 180
  181 LPEKGNIVRS KRQLERRAKN RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW 240
  241 GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD 300
  301 IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA 360
  361 TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK TCVQEGNYRP SKEELAGHVG 420
  421 VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL 480
  481 NVLSPKERRI IKLRFGIDGG KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH 540
  541 AYADLLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] PSI-BLAST 44.0 CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE
    2 View Details [154..547] PSI-BLAST 66.0 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle