| Protein: | SIGF_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 547 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIGF_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
366.0 | [0..8] | [544..64] |
|
Region A: Residues: [1-153] |
1 11 21 31 41 51
| | | | | |
1 MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS 60
61 QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK FEQQLLHSTG LWNLLISPLT 120
121 SETKLPAVVS PLADAELCDV VALAQKALSA SKQ
|
| Detection Method: |  |
| Confidence: | 44.0 |
| Match: | 1sigA |
| Description: | CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [154-547] |
1 11 21 31 41 51
| | | | | |
1 AALLVDDTEA NPSDNIKDSL STSSSMSLPE KGNIVRSKRQ LERRAKNRRA PKSNDVDDEG 60
61 YVPQKTSAKK KYKQGADNDD ALQLFLWGPE TKQLLTAKEE AELISHIQHL LKLEKVKTKL 120
121 ESQNGCEPTI GEWAEAMGIS SPVLKSDIHR GRSSREKLIT ANLRLVVHIA KQYQNRGLNF 180
181 QDLLQEGSMG LMKSVEKFKP QSGCRFATYA YWWIRQSIRK SIFQNSRTIR LPENVYMLLG 240
241 KVSEARKTCV QEGNYRPSKE ELAGHVGVST EKLDKLLYNT RTPLSMQQPI WSDQDTTFQE 300
301 ITPDSGIETP TMSVGKQLMR NHVRNLLNVL SPKERRIIKL RFGIDGGKQR SLSEIGEIYG 360
361 LSKERVRQLE SRALYRLKQN MNSHGLHAYA DLLV
|
| Detection Method: | |
| Confidence: | 66.0 |
| Match: | 1l9zH |
| Description: | DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |
Matching Structure (courtesy of the PDB): |
|
