YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: UBP1C_ARATH

General Information:
Name(s) found: UBP1C_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 427 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: mRNA 3'-UTR binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS  60
   61 VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF VHYFDRRSAA LAILSLNGRH 120
  121 LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK 180
  181 TGRSRGFGFV SFRNQQDAQT AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE 240
  241 LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR 300
  301 DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP 360
  361 GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI NAAGATAAMY DGGFQNVAAA 420
  421 QQLMYYQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 39.39794 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [143..244] PSI-BLAST 20.69897 No description for 2dgoA was found.
    3 View Details [245..427] FFAS03 4.15 CBP20, 20KDa nuclear cap-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  4.74219150342477 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.65259034341669 bayes_pls_golite062009
  • mRNA binding
    		•  3.63162433534903 bayes_pls_golite062009
  • binding
    		•  3.48033873254013 bayes_pls_golite062009
    		• 2.01377515075173 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94691250607537 bayes_pls_golite062009
  • DNA binding
    		•  1.80828042019548 bayes_pls_golite062009
  • transcription factor activity
    		•  1.17242427495624 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.08300488237934 bayes_pls_golite062009
  • protein binding
    		•  1.05805521997665 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.642030653276422 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.462558743683805 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.327072171076297 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle