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Protein Overview: RAD50_ARATH

General Information:
Name(s) found: RAD50_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • DNA repair protein RAD50 OS=Arabidopsis thaliana GN=RAD50 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1316 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    Mre11 complex [TAS]
    Biological Process: DNA repair [ISS]
    telomere maintenance [IMP]
    telomere capping [IMP]
    mitotic recombination [IMP]
    double-strand break repair [IMP]
    Molecular Function: ATP binding [IEA]
    zinc ion binding [IEA]
    nuclease activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVDKMLIK GIRSFDPENK NVVTFFRPLT LIVGANGAGK TTIIECLKVS CTGELPPNAR  60
   61 SGHSFIHDPK VAGETETKAQ IKLRFKTAAG KDVVCIRSFQ LTQKASKMEY KAIESVLQTI 120
  121 NPHTGEKVCL SYRCADMDRE IPALMGVSKA ILENVIFVHQ DESNWPLQDP STLKKKFDDI 180
  181 FSATRYTKAL EVIKKLHKDQ AQEIKTFKLK LENLQTLKDA AYKLRESIAQ DQERTESSKV 240
  241 QMLELETSVQ KVDAEVHNKE MMLKDLRKLQ DQVSIKTAER STLFKEQQRQ YAALPEENED 300
  301 TIEELKEWKS KFEERLALLG TKIRKMEREM VDTETTISSL HNAKTNYMLE ISKLQTEAEA 360
  361 HMLLKNERDS TIQNIFFHYN LGNVPSTPFS TEVVLNLTNR IKSRLGELEM DLLDKKKSNE 420
  421 TALSTAWDCY MDANDRWKSI EAQKRAKDEI KMGISKRIEE KEIERDSFEF EISTVDVKQT 480
  481 DEREKQVQVE LERKTKQNSE RGFESKIEQK QHEIYSLEHK IKTLNRERDV MAGDAEDRVK 540
  541 LSLKKTEQEN LKKKHKKIID ECKDRIRGVL KGRLPPEKDM KREIVQALRS IEREYDDLSL 600
  601 KSREAEKEVN MLQMKIQEVN NSLFKHNKDT ESRKRYIESK LQALKQESVT IDAYPKLLES 660
  661 AKDKRDDRKR EYNMANGMRQ MFEPFEKRAR QEHSCPCCER SFTADEEASF IKKQRVKASS 720
  721 TGEHLKALAV ESSNADSVFQ QLDKLRAVFE EYSKLTTEII PLAEKTLQEH TEELGQKSEA 780
  781 LDDVLGISAQ IKADKDSIEA LVQPLENADR IFQEIVSYQK QIEDLEYKLD FRGLGVKTME 840
  841 EIQSELSSLQ SSKDKLHGEL EKLRDDQIYM ERDISCLQAR WHAVREEKAK AANLLRDVTK 900
  901 AEEDLERLAE EKSQLDLDVK YLTEALGPLS KEKEQLLSDY NDMKIRRNQE YEELAEKKRN 960
  961 YQQEVEALLK ASYKINEYHD LKKGERLDDI QEKQRLSDSQ LQSCEARKNE LAGELNRNKD1020
 1021 LMRNQDQLRR NIEDNLNYRT TKAKVEELTR EIESLEEQIL NIGGIAAVEA EIVKILRERE1080
 1081 RLLSELNRCR GTVSVYESSI SKNRVELKQA QYKDIDKRHF DQLIQLKTTE MANKDLDRYY1140
 1141 NALDKALMRF HTMKMEEINK IIRELWQQTY RGQDMDYIRI HSDSEGAGTR SYSYKVLMQT1200
 1201 GDTELEMRGR CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDGP NSESLAGALL1260
 1261 RIMEDRKGQE NFQLIVITHD ERFAQMIGQR QHAEKYYRVA KDDMQHSIIE AQEIFD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..432] PSI-BLAST 15.0 Heavy meromyosin subfragment
    2 View Details [433..572] PSI-BLAST 9.69897 Tropomyosin
    3 View Details [573..661] deduced N/A No confident structure predictions are available.
    4 View Details [662..732] Pfam 16.102373 No description for PF04423.5 was found. No confident structure predictions are available.
    5 View Details [733..832] deduced N/A No confident structure predictions are available.
    6 View Details [833..1138] FFAS03 2.12 Tropomyosin
    7 View Details [1139..1316] PSI-BLAST 15.69897 No description for 2ghiA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle