| Protein: | RAD50_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1316 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD50_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
341.0 | [0..90] | [1263..1713] |
|
Region A: Residues: [1-432] |
1 11 21 31 41 51
| | | | | |
1 MSTVDKMLIK GIRSFDPENK NVVTFFRPLT LIVGANGAGK TTIIECLKVS CTGELPPNAR 60
61 SGHSFIHDPK VAGETETKAQ IKLRFKTAAG KDVVCIRSFQ LTQKASKMEY KAIESVLQTI 120
121 NPHTGEKVCL SYRCADMDRE IPALMGVSKA ILENVIFVHQ DESNWPLQDP STLKKKFDDI 180
181 FSATRYTKAL EVIKKLHKDQ AQEIKTFKLK LENLQTLKDA AYKLRESIAQ DQERTESSKV 240
241 QMLELETSVQ KVDAEVHNKE MMLKDLRKLQ DQVSIKTAER STLFKEQQRQ YAALPEENED 300
301 TIEELKEWKS KFEERLALLG TKIRKMEREM VDTETTISSL HNAKTNYMLE ISKLQTEAEA 360
361 HMLLKNERDS TIQNIFFHYN LGNVPSTPFS TEVVLNLTNR IKSRLGELEM DLLDKKKSNE 420
421 TALSTAWDCY MD
|
| Detection Method: |  |
| Confidence: | 15.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-572] |
1 11 21 31 41 51
| | | | | |
1 ANDRWKSIEA QKRAKDEIKM GISKRIEEKE IERDSFEFEI STVDVKQTDE REKQVQVELE 60
61 RKTKQNSERG FESKIEQKQH EIYSLEHKIK TLNRERDVMA GDAEDRVKLS LKKTEQENLK 120
121 KKHKKIIDEC KDRIRGVLKG
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [573-661] |
1 11 21 31 41 51
| | | | | |
1 RLPPEKDMKR EIVQALRSIE REYDDLSLKS REAEKEVNML QMKIQEVNNS LFKHNKDTES 60
61 RKRYIESKLQ ALKQESVTID AYPKLLESA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [662-732] |
1 11 21 31 41 51
| | | | | |
1 KDKRDDRKRE YNMANGMRQM FEPFEKRARQ EHSCPCCERS FTADEEASFI KKQRVKASST 60
61 GEHLKALAVE S
|
| Detection Method: | |
| Confidence: | 16.102373 |
| Match: | PF04423.5 |
| Description: | No description for PF04423.5 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [733-832] |
1 11 21 31 41 51
| | | | | |
1 SNADSVFQQL DKLRAVFEEY SKLTTEIIPL AEKTLQEHTE ELGQKSEALD DVLGISAQIK 60
61 ADKDSIEALV QPLENADRIF QEIVSYQKQI EDLEYKLDFR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [833-1138] |
1 11 21 31 41 51
| | | | | |
1 GLGVKTMEEI QSELSSLQSS KDKLHGELEK LRDDQIYMER DISCLQARWH AVREEKAKAA 60
61 NLLRDVTKAE EDLERLAEEK SQLDLDVKYL TEALGPLSKE KEQLLSDYND MKIRRNQEYE 120
121 ELAEKKRNYQ QEVEALLKAS YKINEYHDLK KGERLDDIQE KQRLSDSQLQ SCEARKNELA 180
181 GELNRNKDLM RNQDQLRRNI EDNLNYRTTK AKVEELTREI ESLEEQILNI GGIAAVEAEI 240
241 VKILRERERL LSELNRCRGT VSVYESSISK NRVELKQAQY KDIDKRHFDQ LIQLKTTEMA 300
301 NKDLDR
|
| Detection Method: | |
| Confidence: | 2.12 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1139-1316] |
1 11 21 31 41 51
| | | | | |
1 YYNALDKALM RFHTMKMEEI NKIIRELWQQ TYRGQDMDYI RIHSDSEGAG TRSYSYKVLM 60
61 QTGDTELEMR GRCSAGQKVL ASLIIRLALA ETFCLNCGIL ALDEPTTNLD GPNSESLAGA 120
121 LLRIMEDRKG QENFQLIVIT HDERFAQMIG QRQHAEKYYR VAKDDMQHSI IEAQEIFD
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 2ghiA |
| Description: | No description for 2ghiA was found. |
