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Protein Overview: TRP3_ARATH

General Information:
Name(s) found: TRP3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|45357108|gb|AAS58513.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|30102684|gb|AAP21260.1| At3g12560 [Arabidopsis thaliana] [NCBI NR]
  • gi|15230530|ref|NP_187862.1| TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|12321981|gb|AAG51038.1|AC069474_37 myb-family transcription factor, putative; 42946-45522 [Arabidopsis thaliana] [NCBI NR]
  • gi|110743875|dbj|BAE99772.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1 [Swiss-Prot]
  • (Q9C7B1) Myb-family transcription factor, putative (At3g12560) [athaliana3702.FASTAC.txt]
  • At3g12560 [Arabidopsis thaliana]gi|45357108|gb|AAS58513.1| MYB transcription factor [Arabidopsis thaliana]gi|12321981|gb|AAG51038.1| myb-family transcription factor, putative; 42946-45522 [Arabidopsis thaliana]gi|15230530|ref|NP_187862.1| telomeric DNA [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATTBP2, TRFL9 | TRFL9 (TRF-LIKE 9); DNA binding | chr3:3982279-3984855 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g12560 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • myb-family transcription factor, putative; 42946-45522 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • TRFL9 (TRF-LIKE 9); DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TRFL9, ATTBP2 | TRF-like 9 | chr3:3982272-3984848 REVERSE LENGTH=619 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 619 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    Biological Process: response to abscisic acid stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    telomeric DNA binding [IDA]
    DNA bending activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES  60
   61 ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY DISTEKCVVN SCFSFPDSDG 120
  121 VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ 180
  181 FPKSVCVGGD LKSPSTLDMT PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT 240
  241 IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS 300
  301 SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL 360
  361 LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT LEPSPSKVPL PLCSEDPAVP 420
  421 TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP 480
  481 LPELEVKALA IVPLNQKPKR TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF 540
  541 EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG 600
  601 ASKDPDMNRG GAFESGVSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..255] deduced N/A No confident structure predictions are available.
    2 View Details [256..504] FFAS03 0.978 Structure of the DNA repair protein hHR23a
    3 View Details [505..619] PSI-BLAST 12.0 No description for 2ajeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0155013961187369 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle