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Protein Overview: DDB1A_ARATH

General Information:
Name(s) found: DDB1A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7267302|emb|CAB81084.1| UV-damaged DNA binding factor-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|55976605|sp|Q9M0V3.1|DDB1A_ARATH RecName: Full=DNA damage-binding protein 1a; AltName: Full=UV-damaged DNA-binding protein 1a; Short=DDB1a [NCBI NR]
  • gi|25294328|pir||B85068 UV-damaged DNA binding factor-like protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|25054828|gb|AAN71904.1| putative UV-damaged DNA binding factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15235577|ref|NP_192451.1| DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1 [Swiss-Prot]
  • (Q9M0V3) UV-damaged DNA binding factor-like protein [athaliana3702.FASTAC.txt]
  • UV-damaged DNA binding factor-like protein [Arabidopsis thaliana]gi|25054828|gb|AAN71904.1| putative UV-damaged DNA binding factor [Arabidopsis thaliana]gi|15235577|ref|NP_192451.1| UV-damaged DNA-binding protein, putative [Arabidopsis thaliana]gi|2529 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA damage binding protein 1a [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: DDB1A | DDB1A (UV-damaged DNA-binding protein 1A); DNA binding | chr4:2746285-2752660 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA damage-binding protein 1a (UV-damaged DNA-binding protein 1a) (DDB1a) [nr-271106-contam.fasta]
  • putative UV-damaged DNA binding factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DDB1A; DNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • UV-damaged DNA binding factor-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: DDB1A | damaged DNA binding protein 1A | chr4:2746288-2752663 FORWARD LENGTH=1088 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1088 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][IPI]
    CUL4 RING ubiquitin ligase complex [IPI]
    Biological Process: negative regulation of transcription [IPI]
    negative regulation of photomorphogenesis [IGI]
    Molecular Function: DNA binding [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG  60
   61 RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQI 120
  121 GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL 180
  181 YQDNKDARHV KTYEVSLKDK DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC 240
  241 SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET 300
  301 SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE 360
  361 RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS 420
  421 FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR 480
  481 DEWHAPAGFT VNVATANASQ VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI 540
  541 GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL 600
  601 GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL 660
  661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP LGEHARRICH 720
  721 QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK 780
  781 NVYYCVGTAY VLPEENEPTK GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN 840
  841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA 900
  901 IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG 960
  961 EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS LPQEQYTFLE KLQSSLRKVI1020
 1021 KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR1080
 1081 VEELTRLH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1088] PSI-BLAST 1000.0 No description for 3e0cA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle