YRC Public Data Repository - Protein Structure Prediction

Protein:	DDB1A_ARATH
Organism:	Arabidopsis thaliana
Length:	1088 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDB1A_ARATH.

Description	E-value	Query Range	Subject Range
DDB1B_ARATH - DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2 SV=2	1012.0	[0..1]	[1088..1]
gi\|215694552, gi... - gi\|50932983\|ref\|XP_476019.1\| putative DNA damage binding protein 1 [Oryza sativa (japonica cultivar-...	1003.0	[0..1]	[1088..1]
DDB1_SOLLC - DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1	999.0	[0..1]	[1088..1]
DDB1_SOLCE - DNA damage-binding protein 1 OS=Solanum cheesmaniae GN=DDB1 PE=3 SV=1	993.0	[0..1]	[1088..1]
gi\|109105941 - gi\|109105941\|ref\|XP_001082958.1\| PREDICTED: damage-specific DNA binding protein 1 [Macaca mulatta]	988.0	[0..1]	[1071..1]
gi\|73983859 - gi\|73983859\|ref\|XP_533275.2\| PREDICTED: similar to DNA damage binding protein 1 (Damage-specific DNA... tr\|M3XDV7\|M3XDV7... - Damage specific DNA binding protein 1 OS=Felis catus GN=DDB1 PE=4 SV=1	987.0	[0..1]	[1088..1]
gi\|74215029 - gi\|74215029\|dbj\|BAE33503.1\| unnamed protein product [Mus musculus]	987.0	[0..1]	[1088..1]

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Predicted Domain #1

Region A:
Residues: [1-1088]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG  60
   61 RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQI 120
  121 GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL 180
  181 YQDNKDARHV KTYEVSLKDK DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC 240
  241 SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET 300
  301 SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE 360
  361 RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS 420
  421 FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR 480
  481 DEWHAPAGFT VNVATANASQ VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI 540
  541 GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL 600
  601 GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL 660
  661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP LGEHARRICH 720
  721 QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK 780
  781 NVYYCVGTAY VLPEENEPTK GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN 840
  841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA 900
  901 IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG 960
  961 EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS LPQEQYTFLE KLQSSLRKVI1020
 1021 KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR1080
 1081 VEELTRLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	3e0cA
Description:	No description for 3e0cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits