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Protein Overview: GLYM1_ARATH

General Information:
Name(s) found: GLYM1_ARATH [Swiss-Prot]
Description(s) found:
Found 23 descriptions.
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  • Serine hydroxymethyltransferase 1, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 517 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    chloroplast [IDA]
    cytosolic ribosome [IDA]
    mitochondrial matrix [ISS]
    membrane [IDA]
    mitochondrion [IDA]
    apoplast [IDA]
    stromule [IDA]
    plasma membrane [IDA]
    Biological Process: response to cold [IEP]
    oxygen and reactive oxygen species metabolic process [TAS]
    L-serine metabolic process [ISS]
    photorespiration [IMP]
    glycine decarboxylation via glycine cleavage system [IMP]
    response to cadmium ion [IEP]
    plant-type hypersensitive response [TAS]
    glycine metabolic process [ISS]
    Molecular Function: glycine hydroxymethyltransferase activity [ISS][TAS]
    poly(U) RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP  60
   61 EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN KYSEGYPGAR YYGGNEYIDM 120
  121 AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH 180
  181 GYQTDTKKIS AVSIFFETMP YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY 240
  241 ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK 300
  301 GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL 360
  361 SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR VEKVLEAVHI ASNKNTVPGD 420
  421 VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME 480
  481 SSSTIQSEIA KLRHEVEEFA KQFPTIGFEK ETMKYKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..517] PSI-BLAST 93.154902 Human mitochondrial serine hydroxymethyltransferase 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  3.359406422625 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  3.2128372762799 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  3.2128372762799 bayes_pls_golite062009
  • transferase activity
    		•  2.59075614411581 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
    		•  2.47911083054773 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • O-phospho-L-serine:2-oxoglutarate aminotransferase activity
    		•  2.1692959843619 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.67701710033155 bayes_pls_golite062009
  • DNA binding
    		•  1.4774443071095 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.39741122443159 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  1.19150094103499 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15775909410582 bayes_pls_golite062009
  • N-succinyltransferase activity
    		•  1.14675852378654 bayes_pls_golite062009
  • binding
    		•  1.09053123792737 bayes_pls_golite062009
  • structural molecule activity
    		•  0.754675308623467 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.681623261233707 bayes_pls_golite062009
  • vitamin binding
    		•  0.66463470119531 bayes_pls_golite062009
  • protein binding
    		•  0.613130945854863 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.60304280865376 bayes_pls_golite062009
  • L-allo-threonine aldolase activity
    		•  0.500744432308415 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.271623203801431 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle