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Protein Overview: CAF1A_ARATH

General Information:
Name(s) found: CAF1A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75337235|sp|Q9SHJ0.1|CAF1A_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 1 [NCBI NR]
  • gi|6692686|gb|AAF24820.1|AC007592_13 F12K11.20 [Arabidopsis thaliana] [NCBI NR]
  • gi|28973249|gb|AAO63949.1| putative CCR4-associated factor [Arabidopsis thaliana] [NCBI NR]
  • gi|26451267|dbj|BAC42735.1| putative CCR4-associated factor [Arabidopsis thaliana] [NCBI NR]
  • pir||D86200 protein F12K11.20 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221481|ref|NP_172133.1| CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] [NCBI NR]
  • Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1 [Swiss-Prot]
  • (Q9SHJ0) F12K11.20 (Putative CCR4-associated factor) [athaliana3702.FASTAC.txt]
  • putative CCR4-associated factor [Arabidopsis thaliana]gi|28973249|gb|AAO63949.1| putative CCR4-associated factor [Arabidopsis thaliana]gi|25406921|pir||D86200 protein F12K11.20 [imported] - Arabidopsis thalianagi|6692686|gb|AAF24820.1| F12K11.20 [Arabi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 CCR4-NOT transcription complex protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | CCR4-NOT transcription complex protein, putative | chr1:1965923-1967005 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F12K11.20 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CCR4-associated factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribonuclease/ transcriptional repressor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:1965924-1967006 FORWARD LENGTH=360 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 360 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: RNA modification [ISS]
    Molecular Function: nucleic acid binding [IEA]
    ribonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM  60
   61 KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT RNELSIEFLR RHGLDLQKIR 120
  121 DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV 180
  181 KVFGQVYDTK VMAGFCEGLG EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV 240
  241 YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL 300
  301 VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE 360
  361

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..360] PSI-BLAST 85.522879 No description for 2p51A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle