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Protein Overview: PSD1B_ARATH

General Information:
Name(s) found: PSD1B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7211984|gb|AAF40455.1|AC004809_13 Strong similarity to the SEN3-like tRNA-processing protein F24L7.13 from A. thaliana gi|2914700 on BAC gb|AC003974. EST gb|AA712969 comes from this gene [Arabidopsis thaliana] [NCBI NR]
  • gi|28393231|gb|AAO42045.1| putative 26S proteasome regulatory subunit (RPN2) [Arabidopsis thaliana] [NCBI NR]
  • pir||C86181 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220326|ref|NP_171973.1| 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] [NCBI NR]
  • 26S proteasome non-ATPase regulatory subunit 1 homolog B OS=Arabidopsis thaliana GN=RPN2B PE=1 SV=1 [Swiss-Prot]
  • (Q9MAT0) F13M7.20 protein (Putative 26S proteasome regulatory subunit) (RPN2) [athaliana3702.FASTAC.txt]
  • putative 26S proteasome regulatory subunit (RPN2) [Arabidopsis thaliana]gi|7211984|gb|AAF40455.1| Strong similarity to the SEN3-like tRNA-processing protein F24L7.13 from A. thaliana gi|2914700 on BAC gb|AC003974. EST gb|AA712969 comes from this gene. [ [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 26S proteasome regulatory subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 26S proteasome regulatory subunit, putative | chr1:1350303-1355260 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Strong similarity to the SEN3-like tRNA-processing protein F24L7.13 from A. thaliana gi|2914700 on BAC gb|AC003974. EST gb|AA712969 comes from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative 26S proteasome regulatory subunit (RPN2) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr1:1350304-1355261 FORWARD LENGTH=1001 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 26S proteasome regulatory subunit N2 OS=Arabidopsis thaliana GN=F13M7.20 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1001 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    proteasome regulatory particle, base subcomplex [ISS][TAS]
    plasma membrane [IDA]
    Biological Process: protein catabolic process [TAS]
    ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: binding [IEA]
    enzyme regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ  60
   61 HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS DYIHTLLSKA IDEYAILRSK 120
  121 AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT 180
  181 LSYCINVSHS FVNQREYRHE VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL 240
  241 LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA 300
  301 GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL 360
  361 KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD WLSRATNWAK FSATAGLGVI 420
  421 HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS 480
  481 VEVIQHGACL GLGLAALGTA DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS 540
  541 EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY 600
  601 SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY 660
  661 GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA MAMVMVQISE ASDSRVGAFR 720
  721 RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW 780
  781 YWYPLIYFIS LAFSPTAFIG LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT 840
  841 AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP 900
  901 EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT 960
  961 STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] deduced N/A No confident structure predictions are available.
    2 View Details [189..705] PSI-BLAST 79.0 No description for 2pkgA was found.
    3 View Details [706..805] PSI-BLAST 58.69897 Structure of the Kap60p:Nup2 complex
    4 View Details [806..1001] MSA 13.210997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.86831493830281 bayes_pls_golite062009
  • hydrolase activity
    		•  2.5894939457048 bayes_pls_golite062009
  • protein binding
    		•  1.63705839411934 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.23804310697631 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.13208464017585 bayes_pls_golite062009
  • structural molecule activity
    		•  0.440301695287117 bayes_pls_golite062009
  • actin binding
    		•  0.360199499297314 bayes_pls_golite062009
  • DNA binding
    		•  0.171056781378569 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.123389318446902 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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