| Protein: | PSD1B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1001 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD1B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
908.0 | [0..2] | [996..1] |
|
Region A: Residues: [1-188] |
1 11 21 31 41 51
| | | | | |
1 MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ 60
61 HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS DYIHTLLSKA IDEYAILRSK 120
121 AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT 180
181 LSYCINVS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [189-705] |
1 11 21 31 41 51
| | | | | |
1 HSFVNQREYR HEVLRLLVNV YQKLASPDYL SICQCLMFLD EPQGVASILE KLLRSENKDD 60
61 ALLAFQISFD LVQNEHQAFL MSVRDRLPAP KTRPVEAIQA VETSTAQNEN TAGDVQMADE 120
121 TPSQTIVHET DPVDAVYAER LTKAKGILSG ETSIQLTLQF LYSHNKSDLL ILKTIKQSVE 180
181 MRNSVCHSAT IYANAIMHAG TTVDTFLREN LDWLSRATNW AKFSATAGLG VIHRGHLQQG 240
241 RSLMAPYLPQ GGAGGGGSPY SEGGALYALG LIHANHGEGI KQFLRDSLRS TSVEVIQHGA 300
301 CLGLGLAALG TADEDIYDDI KSVLYTDSAV AGEAAGISMG LLLVGTATDK ASEMLAYAHE 360
361 TQHEKIIRGL ALGIALTVYG REEGADTLIE QMTRDQDPII RYGGMYALAL AYSGTANNKA 420
421 IRQLLHFAVS DVSDDVRRTA VLALGFVLYS DPEQTPRIVS LLSESYNPHV RYGAALAVGI 480
481 SCAGTGLSEA ISLLEPLTSD VVDFVRQGAL IAMAMVM
|
| Detection Method: | |
| Confidence: | 79.0 |
| Match: | 2pkgA |
| Description: | No description for 2pkgA was found. |
| Term | Confidence | Notes |
| binding | 2.86831493830281 | bayes_pls_golite062009 |
| hydrolase activity | 2.5894939457048 | bayes_pls_golite062009 |
| protein binding | 1.63705839411934 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.23804310697631 | bayes_pls_golite062009 |
| nucleic acid binding | 1.13208464017585 | bayes_pls_golite062009 |
| structural molecule activity | 0.440301695287117 | bayes_pls_golite062009 |
| actin binding | 0.360199499297314 | bayes_pls_golite062009 |
| DNA binding | 0.171056781378569 | bayes_pls_golite062009 |
| transcription regulator activity | 0.123389318446902 | bayes_pls_golite062009 |
|
Region A: Residues: [706-805] |
1 11 21 31 41 51
| | | | | |
1 VQISEASDSR VGAFRRQLEK IILDKHEDTM SKMGAILASG ILDAGGRNVT IRLLSKTKHD 60
61 KVTAVIGLTV FSQFWYWYPL IYFISLAFSP TAFIGLNYDL
|
| Detection Method: | |
| Confidence: | 58.69897 |
| Match: | 2c1tA |
| Description: | Structure of the Kap60p:Nup2 complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [806-1001] |
1 11 21 31 41 51
| | | | | |
1 KVPKFEFMSH AKPSLFEYPK PTTVATANTA AKLPTAVLST SAKAKAKAKK EAEQKAKAEN 60
61 SGNEAGKANA ASDEKEAESM QVDSTATTVE KKVEPEATFE ILVNPARVVP SQEKYIKLME 120
121 DSRYVPMKLA PSGFVLLRDL RPHEPEVLSL TDAPTSTASP AVGAEAAGQA QQAATTSAMA 180
181 IDDEPQPPQA FEYASP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
