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Protein Overview: SIGC_ARATH

General Information:
Name(s) found: SIGC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana] [NCBI NR]
  • gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana] [NCBI NR]
  • gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana] [NCBI NR]
  • gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana] [NCBI NR]
  • gi|15232364|ref|NP_190960.1| SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana] [NCBI NR]
  • pir||T45932 sigma factor SigC - Arabidopsis thaliana [NCBI NR]
  • RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC PE=2 SV=1 [Swiss-Prot]
  • (O24621) Sigma factor 3 (RNA polymerase sigma factor) [athaliana3702.FASTAC.txt]
  • sigma factor SigC [Arabidopsis thaliana]gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]gi|11358847|pir||T45932 sigma factor SigC - Arabidopsis thalianagi|15232364|ref|N [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA polymerase sigma subunit SigC (sigC) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SIG3, SIGC | SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription factor | chr3:19972019-19974798 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SigC [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • sigma factor 3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SIGC; DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • sigma factor SigC [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C | chr3:19961041-19963820 REVERSE LENGTH=571 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 571 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: photosynthesis, dark reaction [NAS]
    regulation of transcription, DNA-dependent [ISS]
    transcription initiation [TAS]
    Molecular Function: DNA binding [ISS]
    sigma factor activity [ISS]
    transcription factor activity [ISS]
    DNA-directed RNA polymerase activity [IMP][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS  60
   61 LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN DSLKACGCAS VSPYTAQNNV 120
  121 YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK 180
  181 LGAAELFKTC LSRYRGSSIT SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG 240
  241 DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE 300
  301 ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED 360
  361 LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV SRHARGVHIP SSIIRTINHI 420
  421 QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF 480
  481 TPDTTMESPE EAVMRQSARR DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV 540
  541 SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] deduced N/A No confident structure predictions are available.
    2 View Details [92..189] PSI-BLAST 53.09691 CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE
    3 View Details [190..571] PSI-BLAST 65.522879 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.55

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle