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Protein Overview: PTR30_ARATH

General Information:
Name(s) found: PTR30_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana GN=NPF5.1 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 583 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA][ISS]
    Biological Process: oligopeptide transport [ISS]
    response to nematode [IEP]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAKVYTQD GTVDLQGRPV LASKTGRWRA CSFLLGYEAF ERMAFYGIAS NLVNYLTKRL  60
   61 HEDTISSVRN VNNWSGAVWI TPIAGAYIAD SYIGRFWTFT ASSLIYVLGM ILLTMAVTVK 120
  121 SLRPTCENGV CNKASSLQVT FFYISLYTIA IGAGGTKPNI STFGADQFDS YSIEEKKQKV 180
  181 SFFNWWMFSS FLGALFATLG LVYIQENLGW GLGYGIPTVG LLVSLVVFYI GTPFYRHKVI 240
  241 KTDNLAKDLV QVPIAAFKNR KLQCPDDHLE LYELDSHYYK SNGKHQVHHT PVFRFLDKAA 300
  301 IKTSSRVPCT VTKVEVAKRV LGLIFIWLVT LIPSTLWAQV NTLFVKQGTT LDRKIGSNFQ 360
  361 IPAASLGSFV TLSMLLSVPM YDQSFVPFMR KKTGNPRGIT LLQRLGVGFA IQIVAIAIAS 420
  421 AVEVKRMRVI KEFHITSPTQ VVPMSIFWLL PQYSLLGIGD VFNAIGLLEF FYDQSPEEMQ 480
  481 SLGTTFFTSG IGLGNFLNSF LVTMIDKITS KGGGKSWIGN NLNDSRLDYY YGFLVVISIV 540
  541 NMGLFVWAAS KYVYKSDDDT KEFSGGGCVQ MEAKALDTSP LSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..474] PSI-BLAST 7.39794 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [475..583] FFAS03 1.1 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.3426261924492 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.29689809004391 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  2.15783210522667 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.94035843948137 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.5181741634556 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • binding
    		•  0.772207656683716 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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