YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR30_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.86
Transmembrane Helix	71	89	0.73
Non-Cytoplasmic	90	95	0.62
Transmembrane Helix	96	119	0.85
Cytoplasmic	120	181	0.85
Transmembrane Helix	182	204	0.92
Non-Cytoplasmic	205	210	0.86
Transmembrane Helix	211	232	0.92
Cytoplasmic	233	319	0.97
Transmembrane Helix	320	340	0.87
Non-Cytoplasmic	341	360	0.84
Transmembrane Helix	361	381	0.91
Cytoplasmic	382	400	0.85
Transmembrane Helix	401	421	0.92
Non-Cytoplasmic	422	448	0.83
Transmembrane Helix	449	472	0.79
Cytoplasmic	473	481	0.81
Transmembrane Helix	482	504	0.86
Non-Cytoplasmic	505	528	0.80
Transmembrane Helix	529	548	0.94
Cytoplasmic	549	583	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAKVYTQD GTVDLQGRPV LASKTGRWRA CSFLLGYEAF ERMAFYGIAS NLVNYLTKRL  60
   61 HEDTISSVRN VNNWSGAVWI TPIAGAYIAD SYIGRFWTFT ASSLIYVLGM ILLTMAVTVK 120
  121 SLRPTCENGV CNKASSLQVT FFYISLYTIA IGAGGTKPNI STFGADQFDS YSIEEKKQKV 180
  181 SFFNWWMFSS FLGALFATLG LVYIQENLGW GLGYGIPTVG LLVSLVVFYI GTPFYRHKVI 240
  241 KTDNLAKDLV QVPIAAFKNR KLQCPDDHLE LYELDSHYYK SNGKHQVHHT PVFRFLDKAA 300
  301 IKTSSRVPCT VTKVEVAKRV LGLIFIWLVT LIPSTLWAQV NTLFVKQGTT LDRKIGSNFQ 360
  361 IPAASLGSFV TLSMLLSVPM YDQSFVPFMR KKTGNPRGIT LLQRLGVGFA IQIVAIAIAS 420
  421 AVEVKRMRVI KEFHITSPTQ VVPMSIFWLL PQYSLLGIGD VFNAIGLLEF FYDQSPEEMQ 480
  481 SLGTTFFTSG IGLGNFLNSF LVTMIDKITS KGGGKSWIGN NLNDSRLDYY YGFLVVISIV 540
  541 NMGLFVWAAS KYVYKSDDDT KEFSGGGCVQ MEAKALDTSP LSI