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Protein Overview: BIM2_ARATH

General Information:
Name(s) found: BIM2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|61211674|sp|Q9CAA4.1|BIM2_ARATH RecName: Full=Transcription factor BIM2; AltName: Full=BES1-interacting Myc-like protein 2; AltName: Full=Transcription factor EN 125; AltName: Full=bHLH transcription factor bHLH102; AltName: Full=Basic helix-loop-helix [NCBI NR]
  • gi|26983866|gb|AAN86185.1| putative DNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E96714 probable DNA-binding protein T6L1.19 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221582|ref|NP_177064.1| BIM2 (BES1-interacting Myc-like protein 2); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|12323222|gb|AAG51594.1|AC011665_15 putative DNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1 [Swiss-Prot]
  • (Q9CAA4) Putative DNA-binding protein [athaliana3702.FASTAC.txt]
  • putative DNA-binding protein [Arabidopsis thaliana]gi|25404792|pir||E96714 probable DNA-binding protein T6L1.19 [imported] - Arabidopsis thalianagi|12323222|gb|AAG51594.1| putative DNA-binding protein [Arabidopsis thaliana]gi|15221582|ref|NP_177064.1| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative transcription factor BIM2 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: BIM2 | BIM2 (BES1-INTERACTING MYC-LIKE PROTEIN 2); DNA binding / transcription factor | chr1:25945467-25947262 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative DNA-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative transcription factor BIM2 (BES1-interacting Myc-like protein 2) (Transcription factor EN 125) (AtbHLH 102) [nr-271106-contam.fasta]
  • | Symbols: BIM2 | BES1-interacting Myc-like protein 2 | chr1:25941804-25943599 FORWARD LENGTH=311 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 311 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: regulation of transcription [IEA]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTGKGNQEE EDYGEEDFNS KREGPSSNTT VHSNRDSKEN DKASAIRSKH SVTEQRRRSK  60
   61 INERFQILRE LIPNSEQKRD TASFLLEVID YVQYLQEKVQ KYEGSYPGWS QEPTKLTPWR 120
  121 NNHWRVQSLG NHPVAINNGS GPGIPFPGKF EDNTVTSTPA IIAEPQIPIE SDKARAITGI 180
  181 SIESQPELDD KGLPPLQPIL PMVQGEQANE CPATSDGLGQ SNDLVIEGGT ISISSAYSHE 240
  241 LLSSLTQALQ NAGIDLSQAK LSVQIDLGKR ANQGLTHEEP SSKNPLSYDT QGRDSSVEEE 300
  301 SEHSHKRMKT L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] PSI-BLAST 14.045757 SREBP-1a
    2 View Details [123..311] MSA 3.566997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.12507195426228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43204604575196 bayes_pls_golite062009
  • DNA binding
    		•  0.40884226851256 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.31759335140578 bayes_pls_golite062009
  • transcription factor activity
    		•  0.09721565916723 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle