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Protein Overview: NAP1B_ARATH

General Information:
Name(s) found: NAP1B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4191778|gb|AAD10147.1| putative nucleosome assembly protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27311993|gb|AAO00962.1| putative nucleosome assembly protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C84577 probable nucleosome assembly protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20466610|gb|AAM20622.1| putative nucleosome assembly protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15224782|ref|NP_179538.1| NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding [Arabidopsis thaliana] [NCBI NR]
  • Nucleosome assembly protein 1;2 OS=Arabidopsis thaliana GN=NAP1;2 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZUP3) Putative nucleosome assembly protein [athaliana3702.FASTAC.txt]
  • putative nucleosome assembly protein [Arabidopsis thaliana]gi|4191778|gb|AAD10147.1| putative nucleosome assembly protein [Arabidopsis thaliana]gi|27311993|gb|AAO00962.1| putative nucleosome assembly protein [Arabidopsis thaliana]gi|25411910|pir||C8457 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nucleosome assembly protein (NAP) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: NAP1;2, NFA2 | NAP1;2/NFA2 (NUCLEOSOME ASSEMBLY PROTEIN1;2); DNA binding | chr2:8445683-8448122 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative nucleosome assembly protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NFA02, NFA2, NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=379 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Nucleosome assembly protein 1;2 OS=Arabidopsis thaliana GN=NAP1;2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    cytoplasm [IDA]
    plasma membrane [IDA]
    Biological Process: DNA mediated transformation [IMP]
    DNA repair [IGI]
    response to cadmium ion [IEP]
    nucleosome assembly [ISS]
    Molecular Function: DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE  60
   61 IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG VVEVEGAAEE VKSEQGEDKS 120
  121 AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY 180
  181 FKNTVLTKTY HMIDEDEPIL EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED 240
  241 CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE 300
  301 ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG 360
  361 RSQLAEGQAG ERPPECKQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 59.69897 The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone binding
    		•  4.83364158381373 bayes_pls_golite062009
  • binding
    		•  2.47653887993806 bayes_pls_golite062009
  • protein binding
    		•  1.48698502617247 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.320444049924598 bayes_pls_golite062009
  • DNA binding
    		•  0.235974054244229 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle