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Protein Overview: PUS6_ARATH

General Information:
Name(s) found: PUS6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75212600|sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA-uridine isomerase 6; AltName: Full=RNA pseudouridylate synthase 6; Flags: Precursor [NCBI NR]
  • pir||T05852 hypothetical protein F17L22.230 - Arabidopsis thaliana [NCBI NR]
  • gi|7268974|emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4455285|emb|CAB36821.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|23296381|gb|AAN13057.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234586|ref|NP_193908.1| pseudouridine synthase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110741616|dbj|BAE98756.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1 [Swiss-Prot]
  • (Q9SVS0) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|7268974|emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana]gi|4455285|emb|CAB36821.1| hypothetical protein [Arabidopsis thaliana]gi|7485646|pir||T05852 hypothetical protein F17L22.230 - Arabidopsis thali [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pseudouridine synthase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pseudouridine synthase family protein | chr4:11564040-11566357 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / pseudouridine synthase/ pseudouridylate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pseudouridine synthase family protein | chr4:11564028-11566345 REVERSE LENGTH=472 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 472 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: pseudouridine synthesis [IEA]
    Molecular Function: pseudouridine synthase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPALTGGY RNLTAPVSLL RTLASTRVTT PLFRSNKHSP RFISSPKRFT CLSLLKTDSQ  60
   61 NQTTLSSSSN SGYHEYNRLM PCPAYNLPPR IEHMVVLEDD VLVSEFISKQ LDLPPLYVAD 120
  121 LIRFGAVHYA LVCPKPPPTA TPEEIILFEE VTSPSVLKKR SSIKGKTVRE AQKTFRVTHT 180
  181 NQYAEAGTYL RVHVHPKRSP RCYEIDWKSR IVAVTDSYVI LDKPAGTTVG GTTDNIEESC 240
  241 ATFASRALDL PEPLKTTHQI DNCTEGCVVF ARTKEYCSVF HTKIRNKEVK KLYRALAAAP 300
  301 LPIGIISHYM RPKNMAPRLV AEDSIQGWHL CQLEVLECKK IPWPDAATEK KHDIEDCGWT 360
  361 SKEFAYECTI NLLTGKTHQI RAQLAACGAP LVGDSMYMPA AIAEMGNPDT NPYGKAKKHY 420
  421 TMEENQKETA VAEWIDRHGK EPRVGIGLQA CQISWDDDDG EHFYEAGTPW WR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] deduced N/A No confident structure predictions are available.
    2 View Details [87..472] PSI-BLAST 76.30103 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.49175104308599 bayes_pls_golite062009
  • isomerase activity
    		•  0.87098451300632 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  0.86450504855635 bayes_pls_golite062009
  • pseudouridine synthase activity
    		•  0.86297783328106 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle