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Protein Overview: gi|27363410, gi|...

General Information:
Name(s) found: gi|8809660 [NCBI NR]
gi|27363410 [NCBI NR]
gi|15241903 [NCBI NR]
gi|13605675 [NCBI NR]
Description(s) found:
Found 15 descriptions.
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  • gi|8809660|dbj|BAA97211.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|27363410|gb|AAO11624.1| At5g62640/MRG21_6 [Arabidopsis thaliana] [NCBI NR]
  • gi|15241903|ref|NP_201070.1| proline-rich family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13605675|gb|AAK32831.1|AF361818_1 AT5g62640/MRG21_6 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 520 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: photoperiodism, flowering [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTKGGKVM NPTDAYRKQI RKREIKRNKK ERQKVREVGI LKKDPEQIKD QIRKLDMSKA  60
   61 EGALDKARKH KKRQLEDTLK MVVKKRKEYD EKKKEQGEAT TSVMFSHLPP QRRLTGEEDL 120
  121 KPEDSVYYHP TLNPTGAPPP GKPPMYNSSI GLAISSDGAS SSSAALSSIT ESEDSVLVNP 180
  181 PPLPPLPDGD NALSASLPLP PLPPLPPTTG LTLPHSPFPP PPPGPPPKEQ DFVRPPLPPP 240
  241 PQLPQSSQPP PPGLSGSQGD GRFPESSDFT FDNRMNANIT SVPLLPPPGI PSNESESRPA 300
  301 ESNASSFQNA NLSKMVAPPP PAPLHQQHQS TFAGAAASLT NFQPDVHPPP GMLRFPPPPP 360
  361 PLDMHPPHPG MFVGHLIPRP PYGPPPGPPP MMRPPLPPGP PPSSFQDGQA MIRPYVPNKP 420
  421 SFVKSAAPTV VRRPLAQHTP ELTSMVPASV RVRRESATVT KPKPKTSIAS SLSFTPRAMA 480
  481 SAATVKVEPA KTSAASKPQS IDDSYTAFLE DMKALGALDG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] FFAS03 0.982 human APP core domain
    2 View Details [145..361] MSA 1.196996 View MSA. No confident structure predictions are available.
    3 View Details [362..520] MSA 3.189994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.225375777463061 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle