| Protein: | gi|27363410, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 520 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27363410, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
253.0 | [0..15] | [520..147] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MKTTKGGKVM NPTDAYRKQI RKREIKRNKK ERQKVREVGI LKKDPEQIKD QIRKLDMSKA 60
61 EGALDKARKH KKRQLEDTLK MVVKKRKEYD EKKKEQGEAT TSVMFSHLPP QRRLTGEEDL 120
121 KPEDSVYYHP TLNPTGAPPP GKPP
|
| Detection Method: |  |
| Confidence: | 0.982 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.225375777463061 | bayes_pls_golite062009 |
|
Region A: Residues: [145-361] |
1 11 21 31 41 51
| | | | | |
1 MYNSSIGLAI SSDGASSSSA ALSSITESED SVLVNPPPLP PLPDGDNALS ASLPLPPLPP 60
61 LPPTTGLTLP HSPFPPPPPG PPPKEQDFVR PPLPPPPQLP QSSQPPPPGL SGSQGDGRFP 120
121 ESSDFTFDNR MNANITSVPL LPPPGIPSNE SESRPAESNA SSFQNANLSK MVAPPPPAPL 180
181 HQQHQSTFAG AAASLTNFQP DVHPPPGMLR FPPPPPP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [362-520] |
1 11 21 31 41 51
| | | | | |
1 LDMHPPHPGM FVGHLIPRPP YGPPPGPPPM MRPPLPPGPP PSSFQDGQAM IRPYVPNKPS 60
61 FVKSAAPTVV RRPLAQHTPE LTSMVPASVR VRRESATVTK PKPKTSIASS LSFTPRAMAS 120
121 AATVKVEPAK TSAASKPQSI DDSYTAFLED MKALGALDG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
