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Protein Overview: ASF1B_ARATH

General Information:
Name(s) found: ASF1B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8885615|dbj|BAA97545.1| anti-silencing protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|75180361|sp|Q9LS09.1|ASF1B_ARATH RecName: Full=Histone chaperone ASF1B; AltName: Full=Anti-silencing function protein 1-like protein b; Short=Anti-silencing function 1b protein; AltName: Full=Silencing group A protein 1 [NCBI NR]
  • gi|27530938|dbj|BAC54104.1| anti-silencing function 1b [Arabidopsis thaliana] [NCBI NR]
  • gi|21554344|gb|AAM63451.1| anti-silencing factor 1-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21389673|gb|AAM48035.1| anti-silencing factor 1-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18252971|gb|AAL62412.1| anti-silencing factor 1-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240842|ref|NP_198627.1| ASF1B (ANTI- SILENCING FUNCTION 1B) [Arabidopsis thaliana] [NCBI NR]
  • Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1 [Swiss-Prot]
  • (Q9LS09) Anti-silencing protein-like (Anti-silencing factor 1-like protein) (Anti-silencing function 1b) [athaliana3702.FASTAC.txt]
  • anti-silencing factor 1-like protein [Arabidopsis thaliana]gi|27530938|dbj|BAC54104.1| anti-silencing function 1b [Arabidopsis thaliana]gi|8885615|dbj|BAA97545.1| anti-silencing protein-like [Arabidopsis thaliana]gi|21389673|gb|AAM48035.1| anti-silenci [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 ASF1-like anti-silencing family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SGA1, SGA01, ASF1B | ASF1B/SGA01/SGA1 (ANTI- SILENCING FUNCTION 1B) | chr5:15225873-15227294 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • anti-silencing factor 1-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • anti-silencing function 1b [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • anti-silencing protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SGA1, SGA01, ASF1B | anti- silencing function 1b | chr5:15208643-15210064 FORWARD LENGTH=218 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: DNA mediated transformation [IMP]
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSINITNVT VLDNPAPFVN PFQFEISYEC LTSLKDDLEW KLIYVGSAED ETYDQVLESV  60
   61 LVGPVNVGNY RFVLQADSPD PLKIREEDII GVTVLLLTCS YMDQEFIRVG YYVNNDYDDE 120
  121 QLREEPPTKV LIDKVQRNIL TDKPRVTKFP INFHPENEQT LGDGPAPTEP FADSVVNGEA 180
  181 PVFLEQPQKL QEIEQFDDSD VNGEAIALLD QPQNLQET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] PSI-BLAST 77.0 Structural analysis of yeast nucleosome-assembly factor CIA1p

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone binding
    		•  4.79132023578789 bayes_pls_golite062009
  • binding
    		•  2.38976505793668 bayes_pls_golite062009
  • protein binding
    		•  1.52798504424405 bayes_pls_golite062009
  • chromatin binding
    		•  0.91435769437764 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.7102207747688 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle