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Protein Overview: CCT13_ARATH

General Information:
Name(s) found: CCT13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|5668773|gb|AAD46000.1|AC005916_12 Contains similarity to gb|AF113001 silencing mediator of retinoic acid and thyroid hormone receptor alpha and gb|AF109179 cyclin T1 from Mus musculus. ESTs gb|N95317, gb|Z29139 and gb|Z30853 come from this gene. [Arab [NCBI NR]
  • gi|26450460|dbj|BAC42344.1| putative cyclin [Arabidopsis thaliana] [NCBI NR]
  • gi|15217663|ref|NP_174084.1| CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|147637770|sp|Q8LBC0.2|CCT13_ARATH RecName: Full=Cyclin-T1-3; Short=CycT1;3 [NCBI NR]
  • gi|12744989|gb|AAK06874.1|AF344323_1 putative cyclin [Arabidopsis thaliana] [NCBI NR]
  • Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 [Swiss-Prot]
  • (Q9SXC3) T17H3.12 protein (Hypothetical protein) (Putative cyclin) [athaliana3702.FASTAC.txt]
  • putative cyclin [Arabidopsis thaliana]gi|26450460|dbj|BAC42344.1| putative cyclin [Arabidopsis thaliana]gi|5668773|gb|AAD46000.1| Contains similarity to gb|AF113001 silencing mediator of retinoic acid and thyroid hormone receptor alpha and gb|AF109179 c [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cyclin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CYCT1;3 | CYCT1;3; cyclin-dependent protein kinase | chr1:9611634-9613954 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cyclin-dependent protein kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative cyclin [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Contains similarity to gb|AF113001 silencing mediator of retinoic acid and thyroid hormone receptor alpha and gb|AF109179 cyclin T1 from Mus musculus. ESTs gb|N95317, gb|Z29139 and gb|Z30853 come from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CYCT1;3 | cyclin T 1;3 | chr1:9611647-9613967 FORWARD LENGTH=317 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 317 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of cell cycle [ISS]
    Molecular Function: cyclin-dependent protein kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL  60
   61 RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK NDWQTIATSS LFLACKAEDE 120
  121 PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY 180
  181 KPLAAALNRL NAWPDLATAA WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR 240
  241 RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA 300
  301 YPFHSYPLQS YRQAGIW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..317] PSI-BLAST 37.154902 No description for 2pk2A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  5.50628580248213 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.795846725429 bayes_pls_golite062009
  • binding
    		•  2.4204867358489 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.04886889839181 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.00665312545368 bayes_pls_golite062009
  • cyclin-dependent protein kinase regulator activity
    		•  1.98373193969564 bayes_pls_golite062009
  • DNA binding
    		•  1.94297811210385 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  1.69725593301329 bayes_pls_golite062009
  • kinase regulator activity
    		•  1.65109787211976 bayes_pls_golite062009
  • protein binding
    		•  1.47106731485576 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21921365719206 bayes_pls_golite062009
  • transcription factor binding
    		•  0.749278791251235 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.729629809946521 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.36347576272001 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.138191616709499 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0696060248241566 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle