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Protein Overview: SRRT_ARATH

General Information:
Name(s) found: SRRT_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|23506033|gb|AAN28876.1| At2g27100/T20P8.15 [Arabidopsis thaliana] [NCBI NR]
  • gi|23296648|gb|AAN13138.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20197420|gb|AAC77868.2| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18401322|ref|NP_565635.1| SE (SERRATE); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|16226331|gb|AAL16137.1|AF428305_1 At2g27100/T20P8.15 [Arabidopsis thaliana] [NCBI NR]
  • gi|14532582|gb|AAK64019.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14486602|gb|AAK63206.1|AF311221_1 C2H2 zinc-finger protein SERRATE [Arabidopsis thaliana] [NCBI NR]
  • Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2 [Swiss-Prot]
  • (Q9ZVD0) Expressed protein (At2g27100/T20P8.15) (C2H2 zinc-finger protein serrate) (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • At2g27100/T20P8.15 [Arabidopsis thaliana]gi|23296648|gb|AAN13138.1| unknown protein [Arabidopsis thaliana]gi|14532582|gb|AAK64019.1| unknown protein [Arabidopsis thaliana]gi|20197420|gb|AAC77868.2| expressed protein [Arabidopsis thaliana]gi|16226331|g [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 C2H2 zinc-finger protein SERRATE (SE) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SE | SE (SERRATE); transcription factor | chr2:11579665-11583435 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SE (SERRATE); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g27100/T20P8.15 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • C2H2 zinc-finger protein SERRATE [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE) | chr2:11572587-11576357 FORWARD LENGTH=720 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 720 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    chloroplast [IDA]
    nuclear speck [IDA]
    cytosol [IDA]
    nucleolus [IDA]
    Biological Process: chromatin modification [TAS]
    primary microRNA processing [IMP]
    shoot development [IMP]
    regulation of transcription [TAS]
    production of ta-siRNAs involved in RNA interference [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE  60
   61 RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR RHSPPQRRSP PQKRYRRDDN 120
  121 GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG 180
  181 YGDASNSGNP QRDGLMSYKQ FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE 240
  241 DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE 300
  301 DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE 360
  361 ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV ELLDTLVTYL WRVHGLDYYG 420
  421 KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE 480
  481 ALDPHVRKIR DEKYGWKYGC GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF 540
  541 QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE 600
  601 DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV 660
  661 AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR SYQDLDAPEE EVTVIDYRSL 720
  721

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] MSA 15.187997 View MSA. No confident structure predictions are available.
    2 View Details [186..277] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [278..381] deduced N/A No confident structure predictions are available.
    4 View Details [382..543] deduced N/A No confident structure predictions are available.
    5 View Details [544..720] FFAS03 1.55 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle