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Protein Overview: SKI16_ARATH

General Information:
Name(s) found: SKI16_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8810473|gb|AAF80134.1|AC024174_16 Contains similarity to a F-box protein FBA from Mus musculus gb|AF233226. ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534, gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939, gb|T21404, gb|T44511, gb|H37689 come f [NCBI NR]
  • gi|75264072|sp|Q9LND7.1|SKI16_ARATH RecName: Full=F-box protein SKIP16; AltName: Full=SKP1-interacting partner 16 [NCBI NR]
  • pir||D86196 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|25084008|gb|AAN72153.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20466211|gb|AAM20423.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18390613|ref|NP_563759.1| SKIP16 (SKP1/ASK-interacting protein 16); protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|16930491|gb|AAL31931.1|AF419599_1 At1g06110/T21E18_13 [Arabidopsis thaliana] [NCBI NR]
  • F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1 [Swiss-Prot]
  • (Q9LND7) T21E18.16 protein (At1g06110/T21E18_13) (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|8810473|gb|AAF80134.1| Contains similarity to a F-box protein FBA from Mus musculus gb|AF233226. ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534, gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939, gb|T21404, [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 F-box family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SKIP16 | SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16); protein binding | chr1:1853236-1854937 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g06110/T21E18_13 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Contains similarity to a F-box protein FBA from Mus musculus gb|AF233226. ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534, gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939, gb|T21404, gb|T44511, gb|H37689 come from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 | chr1:1853237-1854938 REVERSE LENGTH=436 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 436 amino acids

    Gene Ontology:
    Cellular Component: SCF ubiquitin ligase complex [IPI]
    Biological Process: biological_process [ND]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH  60
   61 GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL TLNFPEAKAT LRKGVTEDDL 120
  121 QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV 180
  181 MRETKESFMR DLGFSSRLDL IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL 240
  241 VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG 300
  301 VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD 360
  361 NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS IDGSFTFVPG SLRDPKGSQF 420
  421 EVKVVEFPLE LPDYIF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..291] PSI-BLAST 35.69897 Skp2; Cyclin A/CDK2-associated p19, Skp2
    2 View Details [292..436] PSI-BLAST 44.39794 Crystal Structure of the Putative ApaA Protein from Bordetella pertussis, Northeast Structural Genomics Target BeR40

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.295853503406924 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle