YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|10176871, gi|...

General Information:
Name(s) found: gi|25083258 [NCBI NR]
gi|15240352 [NCBI NR]
gi|10176871 [NCBI NR]
Description(s) found:
Found 13 descriptions.
SHOW ALL
  • gi|25083258|gb|AAN72055.1| 100 kDa coactivator - like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240352|ref|NP_200986.1| tudor domain-containing protein / nuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10176871|dbj|BAB10078.1| transcription factor-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 985 amino acids

    Gene Ontology:
    Cellular Component: RNA-induced silencing complex [IEA]
    Biological Process: response to cadmium ion [IDA][IEP]
    gibberellin biosynthetic process [IMP]
    seed germination [IMP]
    Molecular Function: nucleic acid binding [IEA][ISS]
    hydrolase activity, acting on ester bonds [IEA]
    protein binding [IEA]
    nuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGAATENQ WLKGRVKAVT SGDCLVITAL THNRAGPPPE KTITLSSLMA PKMARRGGID  60
   61 EPFAWESREF LRKLCIGKEV AFKVDYKVEA IAGREFGSVY LGNENLAKLV VQNGWAKVRR 120
  121 PGQQNQDKVS PYIAELEQLE EQAQQEGFGR WSKVPGAAEA SIRNLPPSAV GDSGNFDAMG 180
  181 LLAASKGKPM EGIVEQVRDG STIRVYLLPE FQFVQVFVAG LQAPSMGRRQ STQEAVVDPD 240
  241 VTATSNGDAS AETRGPLTTA QRLAASAASS VEVSSDPFAM EAKYFTELRV LNRDVRIVLE 300
  301 GVDKFNNLIG SVYYSDGDTV KDLGLELVEN GLAKYVEWSA NMLDEEAKKK LKATELQCKK 360
  361 NRVKMWANYV PPASNSKAIH DQNFTGKVVE VVSGDCLVVA DDSIPFGSPM AERRVCLSSI 420
  421 RSPKMGNPRR EEKPAPYARE AKEFLRQKLI GMEVIVQMEY SRKISPGDGV TTSGAGDRVM 480
  481 DFGSVFLPSP TKGDTAVAAA ATPGANIAEL IISRGLGTVV RHRDFEERSN HYDALLAAEA 540
  541 RAIAGKKNIH SAKDSPALHI ADLTVASAKK AKDFLPSLQR INQISAVVEY VLSGHRFKLY 600
  601 IPKESCSIAF AFSGVRCPGR GEPYSEEAIA LMRRKIMQRD VEIVVENVDR TGTFLGSMWE 660
  661 KNSKTNAGTY LLEAGLAKMQ TGFGADRIPE AHILEMAERS AKNQKLKIWE NYVEGEEVVN 720
  721 GSSKVETRQK ETLKVVVTEV LGGGRFYVQT VGDQKVASIQ NQLAALSLKD APIIGSFNPK 780
  781 KGDIVLAQFS LDNSWNRAMI VNGPRGAVQS PEEEFEVFYI DYGNQEIVPY SAIRPVDPSV 840
  841 SSAPGLAQLC RLAYIKVPGK EEDFGRDAGE YLHTVTLESG KEFRAVVEER DTSGGKVKGQ 900
  901 GTGTELVVTL IAVDDEISVN AAMLQEGIAR MEKRRRWEPK DKQAALDALE KFQDEARKSR 960
  961 TGIWEYGDIQ SDDEDNVPVR KPGRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] PSI-BLAST 26.522879 ACCOMMODATION OF INSERTION MUTATIONS ON THE SURFACE AND IN THE INTERIOR OF STAPHYLOCOCCAL NUCLEASE
    2 View Details [167..380] Pfam 6.721246 No description for PF00565.9 was found. No confident structure predictions are available.
    3 View Details [381..985] PSI-BLAST 100.0 No description for 3bdlA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle