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Protein Overview: SC35_ARATH

General Information:
Name(s) found: SC35_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759396|dbj|BAB09851.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|30697964|ref|NP_851261.1| ATSC35; RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|23505861|gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana] [NCBI NR]
  • gi|22022546|gb|AAM83231.1| AT5g64200/MSJ1_4 [Arabidopsis thaliana] [NCBI NR]
  • gi|21689657|gb|AAM67450.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17380868|gb|AAL36246.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15237641|ref|NP_201225.1| ATSC35; RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1 [Swiss-Prot]
  • (Q9FMG4) Similarity to splicing factor (Hypothetical protein) (AT5g64200/MSJ1_4) [athaliana3702.FASTAC.txt]
  • At5g64200/MSJ1_4 [Arabidopsis thaliana]gi|21689657|gb|AAM67450.1| unknown protein [Arabidopsis thaliana]gi|17380868|gb|AAL36246.1| unknown protein [Arabidopsis thaliana]gi|9759396|dbj|BAB09851.1| unnamed protein product [Arabidopsis thaliana]gi|220225 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Arginine/serine-rich splicing factor SC35 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATSC35; RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g64200/MSJ1_4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g64200/MSJ1_4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g64200/MSJ1_4 OS=Arabidopsis thaliana GN=SC35 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 303 amino acids

    Gene Ontology:
    Cellular Component: nuclear speck [IDA]
    membrane [IDA]
    cytosol [IDA]
    Biological Process: RNA splicing [NAS]
    nuclear mRNA splicing, via spliceosome [TAS]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA  60
   61 FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK ISKGRVVEPP PKSRRSRSRS 120
  121 PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH 180
  181 RRRTRSRSAS PDEKRRVRGR YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR 240
  241 SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY 300
  301 AAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..154] PSI-BLAST 15.522879 No description for 2cjkA was found.
    2 View Details [155..303] FFAS03 1.49 No description for 2j63A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle