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Protein Overview: CAF1J_ARATH

General Information:
Name(s) found: CAF1J_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75334905|sp|Q9LEU4.1|CAF1J_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 10 [NCBI NR]
  • gi|23296319|gb|AAN13040.1| putative CCR4-associated factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15238907|ref|NP_196657.1| CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] [NCBI NR]
  • pir||T50805 CCR4-ASSOCIATED FACTOR-like protein - Arabidopsis thaliana [NCBI NR]
  • Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1 [Swiss-Prot]
  • (Q9LEU4) CCR4-associated factor-like protein [athaliana3702.FASTAC.txt]
  • putative CCR4-associated factor [Arabidopsis thaliana]gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like protein [Arabidopsis thaliana]gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like protein - Arabidopsis thalianagi|15238907|ref|NP_196657.1| CC [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 CCR4-NOT transcription complex protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | CCR4-NOT transcription complex protein, putative | chr5:3464582-3465415 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • CCR4-ASSOCIATED FACTOR-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribonuclease/ transcriptional repressor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CCR4-associated factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:3464581-3465414 FORWARD LENGTH=277 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 277 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: RNA modification [ISS]
    Molecular Function: nucleic acid binding [IEA]
    ribonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETLKEDSI MIREVWDYNL VEEFALIREI VDKFSYIAMD TEFPGVVLKP VATFKYNNDL  60
   61 NYRTLKENVD LLKLIQVGLT FSDENGNLPT CGTDKFCIWQ FNFREFNIGE DIYASESIEL 120
  121 LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP 180
  181 LKQADFFKLL YVYFPTVYDI KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL 240
  241 GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..277] PSI-BLAST 102.0 No description for 2d5rA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  5.30591758406946 bayes_pls_golite062009
  • exoribonuclease activity
    		•  3.71639182685131 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  3.59362615133405 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  3.1992647486402 bayes_pls_golite062009
  • nuclease activity
    		•  3.11657409772275 bayes_pls_golite062009
  • ribonuclease H activity
    		•  2.91966688044755 bayes_pls_golite062009
  • hydrolase activity
    		•  2.78602644579272 bayes_pls_golite062009
    		• 2.73492915653996 bayes_pls_golite062009
  • endonuclease activity
    		•  2.63074055051349 bayes_pls_golite062009
  • endoribonuclease activity
    		•  2.59247838057313 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.57498413015114 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20855917457806 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.14285769817394 bayes_pls_golite062009
  • exonuclease activity
    		•  1.87925169250843 bayes_pls_golite062009
  • DNA binding
    		•  1.86594005896134 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.44123900197846 bayes_pls_golite062009
  • RNA binding
    		•  1.43996903907704 bayes_pls_golite062009
  • transcription activator activity
    		•  1.43417601839369 bayes_pls_golite062009
  • binding
    		•  1.35497934205068 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.32513822925426 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • transcription factor activity
    		•  1.17659544650821 bayes_pls_golite062009
  • protein binding
    		•  1.08578027658199 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.71760273606768 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.708753843279937 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.615788727884275 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.598360955770972 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.24906263529692 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.09423425042945 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.0189279348688405 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle