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Protein Overview: gi|4559354, gi|1...

General Information:
Name(s) found: gi|4559354 [NCBI NR]
gi|25307802 [NCBI NR]
gi|15224658 [NCBI NR]
Description(s) found:
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  • gi|4559354|gb|AAD23015.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||G84642 hypothetical protein At2g24980 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15224658|ref|NP_180070.1| proline-rich extensin-like family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SK35) At2g24980 protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|25307802|pir||G84642 hypothetical protein At2g24980 [imported] - Arabidopsis thalianagi|15224658|ref|NP_180070.1| proline-rich extensin-like family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Proline-rich extensin-like family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | proline-rich extensin-like family protein | chr2:10629532-10631211 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • structural constituent of cell wall [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Proline-rich extensin-like family protein | chr2:10622453-10624132 FORWARD LENGTH=559 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Proline-rich extensin-like family protein OS=Arabidopsis thaliana GN=At2g24980 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 559 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: plant-type cell wall organization [IEA]
    Molecular Function: structural constituent of cell wall [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIENCIVYV VVLSAIAATV TSYPYSSPQT PSYNSPSYEH KGPKYAPHPK PYVKSSPPPQ  60
   61 YYTPSPKVNY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY 120
  121 KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYNSPPPP YYSPSPKVDY KSPPPPYVYS 180
  181 SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS 240
  241 PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP 300
  301 PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP 360
  361 YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYNSPPPP YYSPSPKVYY 420
  421 KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPSYVYS 480
  481 SPPPPYYSPS PKVYYKSPPP SYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS 540
  541 PKVTYKSPPP PYVYKTPYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] deduced N/A No confident structure predictions are available.
    2 View Details [73..267] MSA 3.118988 View MSA. No confident structure predictions are available.
    3 View Details [268..396] MSA 5.118993 View MSA. No confident structure predictions are available.
    4 View Details [397..559] MSA 3.104981 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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