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View Structure Prediction Details

Protein: gi|4559354, gi|1...
Organism: Arabidopsis thaliana
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4559354, gi|1....

Description E-value Query
Range
Subject
Range
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
289.0 [0..5] [558..288]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIENCIVYV VVLSAIAATV TSYPYSSPQT PSYNSPSYEH KGPKYAPHPK PYVKSSPPPQ  60
   61 YYTPSPKVNY KS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPYVYSSP PPPYYSPSPK VDYKSPPPPY VYSSPPPPYY SPSPKVDYKS PPPPYVYSSP  60
   61 PPPYYSPSPK VDYKSPPPPY VYNSPPPPYY SPSPKVDYKS PPPPYVYSSP PPPYYSPSPK 120
  121 VYYKSPPPPY VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY 180
  181 VYSSPPPPYY SPSPK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [268-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYYKSPPPPY VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY  60
   61 VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY VYSSPPPPYY 120
  121 SPSPKVYYK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [397-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPPPPYVYNS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK SPPPPYVYSS  60
   61 PPPPYYSPSP KVYYKSPPPS YVYSSPPPPY YSPSPKVYYK SPPPSYVYSS PPPPYYSPSP 120
  121 KVYYKSPPPP YVYSSPPPPY YSPSPKVTYK SPPPPYVYKT PYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle