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View Structure Prediction Details

Protein: gi|4559354, gi|1...
Organism: Arabidopsis thaliana
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4559354, gi|1....

Description E-value Query
Range
Subject
Range
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
289.0 [0..5] [558..288]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIENCIVYV VVLSAIAATV TSYPYSSPQT PSYNSPSYEH KGPKYAPHPK PYVKSSPPPQ  60
   61 YYTPSPKVNY KS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPYVYSSP PPPYYSPSPK VDYKSPPPPY VYSSPPPPYY SPSPKVDYKS PPPPYVYSSP  60
   61 PPPYYSPSPK VDYKSPPPPY VYNSPPPPYY SPSPKVDYKS PPPPYVYSSP PPPYYSPSPK 120
  121 VYYKSPPPPY VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY 180
  181 VYSSPPPPYY SPSPK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [268-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYYKSPPPPY VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY  60
   61 VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY VYSSPPPPYY 120
  121 SPSPKVYYK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [397-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPPPPYVYNS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK SPPPPYVYSS  60
   61 PPPPYYSPSP KVYYKSPPPS YVYSSPPPPY YSPSPKVYYK SPPPSYVYSS PPPPYYSPSP 120
  121 KVYYKSPPPP YVYSSPPPPY YSPSPKVTYK SPPPPYVYKT PYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle