YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4559354, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.51
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIENCIVYV VVLSAIAATV TSYPYSSPQT PSYNSPSYEH KGPKYAPHPK PYVKSSPPPQ  60
   61 YYTPSPKVNY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY 120
  121 KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYNSPPPP YYSPSPKVDY KSPPPPYVYS 180
  181 SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS 240
  241 PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP 300
  301 PYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP 360
  361 YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYNSPPPP YYSPSPKVYY 420
  421 KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVYY KSPPPSYVYS 480
  481 SPPPPYYSPS PKVYYKSPPP SYVYSSPPPP YYSPSPKVYY KSPPPPYVYS SPPPPYYSPS 540
  541 PKVTYKSPPP PYVYKTPYY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.45
Transmembrane Helix	7	25	0.50
Non-Cytoplasmic	26	559	0.99