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Protein Overview: gi|15220007, gi|...

General Information:
Name(s) found: gi|25372680 [NCBI NR]
gi|15220007 [NCBI NR]
gi|12324592 [NCBI NR]
Description(s) found:
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  • pir||A96830 probable helicase, 55525-51977 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220007|ref|NP_178107.1| helicase-related [Arabidopsis thaliana] [NCBI NR]
  • gi|12324592|gb|AAG52253.1|AC011717_21 putative helicase; 55525-51977 [Arabidopsis thaliana] [NCBI NR]
  • (Q9CA92) Putative helicase [athaliana3702.FASTAC.txt]
  • putative helicase; 55525-51977 [Arabidopsis thaliana]gi|25372680|pir||A96830 probable helicase, 55525-51977 [imported] - Arabidopsis thalianagi|15220007|ref|NP_178107.1| helicase-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Helicase-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | helicase-related | chr1:30053548-30057096 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative helicase; 55525-51977 [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RAD3-like DNA-binding helicase protein | chr1:30048655-30052203 FORWARD LENGTH=882 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Chromosome transmission fidelity protein 1 OS=Arabidopsis thaliana GN=F19K16.15 PE=4 SV=1 [ARATH-contam.fasta]
  • Putative helicase; 55525-51977 OS=Arabidopsis thaliana GN=F19K16.15 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 882 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [IEA]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA]
    ATP binding [IEA]
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [IEA]
    ATP-dependent helicase activity [IEA]
    ATP-dependent DNA helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIREFPAF PYKPYSIQID FMNALYQFLD KGGVSMLESP TGTGKSLSII CSALQWLTDR  60
   61 KEKRNSGLTE ESHKVDGNDD EDEPDWMRNF TLNEADGANG DKSIKNTKSP FSLRKHAKEV 120
  121 FTEGEKADEL NDQEFLLDEY ESQDESSPGG GNSKRKPARG FDSSSSEDEE DENDCSDDEQ 180
  181 GGFKVFFCSR THSQLSQFVK ELRKTVFAKK LKVVCLGSRK NLCINEDVLK LGNVTRINER 240
  241 CLDLQKKKIS QVSKKKNLGA NVRIVRTKAS CRCPMLRKHK LQREFKAESF QQEAMDIEDL 300
  301 VQLGREMRTC PYYGSRRMAP AADLVILPYQ SLLSKSSRES LGLSLKNSVV IIDEAHNLAD 360
  361 TLLSMHDAKL TVSQLEDIHC SIESYLGRFQ NLLGAGNRRY IQIMLILTRA FLKPLASDRN 420
  421 LSSVNVGLDT ENPSKSKPCG ACSMAIYDFL FSLNIDNINL VKLLAYIKES NIIHKVSGYG 480
  481 ERVAAMLQKD PVAHEEMSKL TSFRAFSDML VALTNNNGDG RIIISRTSSS TSGQHGGYIK 540
  541 YVMLTGAKLF SEVVDEAHAV ILAGGTLQPI EETRERLFPW LPSNQLQFFS CSHIVPPESI 600
  601 MPIAVSHGPS GQSFDFSHSS RSSIGMIQEL GLLMSNLVAV VPEGIIVFFS SFEYETQVHT 660
  661 AWSNSGILRR IVKKKRVFRE PRKNTEVEAV LRDYKEAIES ERGAIMLAVV GGKVSEGINF 720
  721 SDSMCRCVVM VGLPYPSPSD IELLERIKHI EGRADSDSIK PSVTLVDDSY YSGDVQAGFG 780
  781 VLKSCKRRGK EYYENLCMKA VNQSIGRAIR HEKDYASILL VDARYSNDPS KRTSHSHPSN 840
  841 KLPKWIKDRL IYSTKGYGDV HRLLHQFFKH KNVENSSETN QH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] MSA 5.294997 View MSA. No confident structure predictions are available.
    2 View Details [127..882] PSI-BLAST 68.69897 No description for 2vsfA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle