YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15220007, gi\|...
Organism:	Arabidopsis thaliana
Length:	882 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15220007, gi|....

Description	E-value	Query Range	Subject Range
gi\|73997803 - gi\|73997803\|ref\|XP_543872.2\| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [...	563.0	[0..2]	[874..7]
gi\|109095565 - gi\|109095565\|ref\|XP_001114510.1\| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide ...	557.0	[0..6]	[873..11]
gi\|100913202 - gi\|100913202\|ref\|NP_085911.2\| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 isoform 1 [Homo sapien...	554.0	[0..6]	[873..11]
DDX11_MOUSE - Probable ATP-dependent DNA helicase DDX11 OS=Mus musculus GN=Ddx11 PE=1 SV=1	534.0	[0..17]	[874..22]
gi\|114645493 - gi\|114645493\|ref\|XP_520821.2\| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglo...	530.0	[0..19]	[873..43]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIREFPAF PYKPYSIQID FMNALYQFLD KGGVSMLESP TGTGKSLSII CSALQWLTDR  60
   61 KEKRNSGLTE ESHKVDGNDD EDEPDWMRNF TLNEADGANG DKSIKNTKSP FSLRKHAKEV 120
  121 FTEGEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-882]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADELNDQEFL LDEYESQDES SPGGGNSKRK PARGFDSSSS EDEEDENDCS DDEQGGFKVF  60
   61 FCSRTHSQLS QFVKELRKTV FAKKLKVVCL GSRKNLCINE DVLKLGNVTR INERCLDLQK 120
  121 KKISQVSKKK NLGANVRIVR TKASCRCPML RKHKLQREFK AESFQQEAMD IEDLVQLGRE 180
  181 MRTCPYYGSR RMAPAADLVI LPYQSLLSKS SRESLGLSLK NSVVIIDEAH NLADTLLSMH 240
  241 DAKLTVSQLE DIHCSIESYL GRFQNLLGAG NRRYIQIMLI LTRAFLKPLA SDRNLSSVNV 300
  301 GLDTENPSKS KPCGACSMAI YDFLFSLNID NINLVKLLAY IKESNIIHKV SGYGERVAAM 360
  361 LQKDPVAHEE MSKLTSFRAF SDMLVALTNN NGDGRIIISR TSSSTSGQHG GYIKYVMLTG 420
  421 AKLFSEVVDE AHAVILAGGT LQPIEETRER LFPWLPSNQL QFFSCSHIVP PESIMPIAVS 480
  481 HGPSGQSFDF SHSSRSSIGM IQELGLLMSN LVAVVPEGII VFFSSFEYET QVHTAWSNSG 540
  541 ILRRIVKKKR VFREPRKNTE VEAVLRDYKE AIESERGAIM LAVVGGKVSE GINFSDSMCR 600
  601 CVVMVGLPYP SPSDIELLER IKHIEGRADS DSIKPSVTLV DDSYYSGDVQ AGFGVLKSCK 660
  661 RRGKEYYENL CMKAVNQSIG RAIRHEKDYA SILLVDARYS NDPSKRTSHS HPSNKLPKWI 720
  721 KDRLIYSTKG YGDVHRLLHQ FFKHKNVENS SETNQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.69897
Match:	2vsfA
Description:	No description for 2vsfA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits