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Protein Overview: DEXHD_ARATH

General Information:
Name(s) found: DEXHD_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • DExH-box ATP-dependent RNA helicase DExH13 OS=Arabidopsis thaliana GN=At2g42270 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 2172 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    nucleoside-triphosphatase activity [IEA]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLGGGGAE EQARLKQYGY KVNSSLVLNS DERRRDTHES SGEPESLRGR IDPKSFGDRV  60
   61 VRGRPHELDE RLNKSKKKKE RCDDLVSARE SKRVRLREVS VLNDTEDGVY QPKTKETRVA 120
  121 FEIMLGLIQQ QLGGQPLDIV CGAADEILAV LKNESVKNHE KKVEIEKLLN VITDQVFSQF 180
  181 VSIGKLITDY EEGGDSLSGK ASEDGGLDYD IGVALECEED DDESDLDMVQ DEKDEEDEDV 240
  241 VELNKTGVVQ VGVAINGEDA RQAKEDTSLN VLDIDAYWLQ RKISQEYEQK IDAQECQELA 300
  301 EELLKILAEG NDRDVEIKLL EHLQFEKFSL VKFLLQNRLK VVWCTRLARG RDQEERNQIE 360
  361 EEMLGLGSEL AAIVKELHAK RATAKEREEK REKDIKEEAQ HLMDDDSGVD GDRGMRDVDD 420
  421 LDLENGWLKG QRQVMDLESL AFNQGGFTRE NNKCELPDRS FRIRGKEFDE VHVPWVSKKF 480
  481 DSNEKLVKIS DLPEWAQPAF RGMQQLNRVQ SKVYGTALFK ADNILLCAPT GAGKTNVAVL 540
  541 TILHQLGLNM NPGGTFNHGN YKIVYVAPMK ALVAEVVDSL SQRLKDFGVT VKELSGDQSL 600
  601 TGQEIKETQI IVTTPEKWDI ITRKSGDRTY TQLVRLLIID EIHLLDDNRG PVLESIVART 660
  661 LRQIESTKEH IRLVGLSATL PNCDDVASFL RVDLKNGLFI FDRSYRPVPL GQQYIGINVK 720
  721 KPLRRFQLMN DICYQKVVAV AGKHQVLIFV HSRKETAKTA RAIRDTAMAN DTLSRFLKED 780
  781 SQSREILKCL AGLLKNNDLK ELLPYGFAIH HAGLTRTDRE IVENQFRWGN LQVLISTATL 840
  841 AWGVNLPAHT VIIKGTQVYN PERGEWMELS PLDVMQMIGR AGRPQYDQQG EGIIITGYSK 900
  901 LQYYLRLMNE QLPIESQFIS KLADQLNAEI VLGTIQNARE ACHWLGYTYL YVRMVRNPTL 960
  961 YGVSPDALAK DLLLEERRAD LIHSAATILD KNNLIKYDRK SGHFQVTDLG RIASYYYISH1020
 1021 GTIAAYNENL KPTMNDIELC RLFSLSEEFK YVTVRQDEKM ELAKLLDRVP IPVKETLEDP1080
 1081 SAKINVLLQV YISKLKLEGL SLTSDMVYIT QSAGRLLRAI FEIVLKRGWA QLSQKALNLS1140
 1141 KMVGKRMWSV QTPLWQFPGI PKEILMKLEK NDLVWERYYD LSSQELGELI CNPKMGRPLH1200
 1201 KYIHQFPKLK LAAHVQPISR SVLQVELTVT PDFHWDDKAN KYVEPFWIIV EDNDGEKILH1260
 1261 HEYFLFKKRV IDEDHTLNFT VPISEPIPPQ YFIRVVSDKW LDSPTVLPVS FRHLILPEKY1320
 1321 PPPTELLDLQ PLPVMALRNP SYETLYQDFK HFNPVQTQVF TVLYNTSDNV VVAAPTGSGK1380
 1381 TICAEFAILR NHLEGPDSAM RVVYIAPLEA IAKEQFRDWE KKFGKGLGLR VVELTGETLL1440
 1441 DLKLLEKGQI IISTPEKWDA LSRRWKQRKY IQQVSLFIVD ELHLIGGQGG QVLEVIVSRM1500
 1501 RYISSQVGNK IRIVALSTSL ANAKDLGEWI GASSCGVFNF PPNVRPVPLE IHIHGVDILS1560
 1561 FEARMQAMTK PTYTAIVQHA KNKKPAIVFV PTRKHVRLTA VDLIAYSHMD NMKSPDFLLG1620
 1621 NLEELEPFLI QICEETLKET LRHGIGYLHE GLSNLDQEIV TQLFEAGRIQ VCVMSSSLCW1680
 1681 GTPLKAHLVV VMGTHFYDGR ENSHSDYPIS NLLQMMGRGS RPLLDDAGKC VIFCHAPRKE1740
 1741 YYKKFLYEAL PVESHLQHFL HDNFNAEVVA RVIENKQDAV DYLTWSFMYR RLPQNPNYYN1800
 1801 LLGVSHRHLS DHLSELVENT LSDLEVSKCI EIDNELDLSP LNLGMIASYY YINYTTIERF1860
 1861 SSLLASKTKM KGLLEILTSA SEYDLIPIRP GEEDAVRRLI NHQRFSFQNP RCTDPRVKTS1920
 1921 ALLQAHFSRQ KISGNLVMDQ CEVLLSATRL LQAMVDVISS NGCLNLALLA MEVSQMVTQG1980
 1981 MWDRDSMLLQ LPHFTKDLAK RCHENPGNNI ETIFDLVEME DDKRQELLQM SDAQLLDIAR2040
 2041 FCNRFPNIDL TYEIVGSNEV SPGKDITLQV LLERDMEGRT EVGPVDAPRY PKTKEEGWWL2100
 2101 VVGEAKTNQL MAIKRISLQR KAQVKLEFAV PTETGEKSYT LYFMCDSYLG CDQEYSFTVD2160
 2161 VKDSDAADHM EE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..64] deduced N/A No confident structure predictions are available.
    2 View Details [65..472] PSI-BLAST 7.69897 Heavy meromyosin subfragment
    3 View Details [473..970] PSI-BLAST 85.522879 No description for 2i4iA was found.
    4 View Details [971..1241] deduced N/A No confident structure predictions are available.
    5 View Details [1242..1328] deduced N/A No confident structure predictions are available.
    6 View Details [1329..2045] PSI-BLAST 86.045757 No description for 2va8A was found.
    7 View Details [2046..2172] PSI-BLAST 88.39794 No description for 2q0zX was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle