YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PUS4_ARATH

General Information:
Name(s) found: PUS4_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pseudouridine synthesis [IEA]
    Molecular Function: pseudouridine synthase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKWRLATAT LRRQLQSSSP TISTFKNPTK ALSAAAHQST RSYSTTQTDD SRGKWLTLPP  60
   61 FSPTIDGTAV GKDLLSDGDS VKSSTDNSKT TALRWILRCR PDLPRTLVQK LFRLRQVRRE 120
  121 MSMSVDGDEL QRSQLKRVAA KESLNVGDRI YLPLSVDNDT PQTPPAKKES FQCSDEERKF 180
  181 VCSLVLYKDP AIIVLNKPHG LAVQGGSGIK TSIDELAASC LKFDKSESPR LVHRLDRDCS 240
  241 GLLVLARTQT AATVLHSIFR EKTTGASAYG VKKNVKSLKR KYMALVIGCP PRQRGQISAP 300
  301 LRKVVVDDGK SERITVNDNG ELVSTQHAIT EYRVIESSPH GYTWLELRPL TGRKHQLRVH 360
  361 CAEVLGTPIV GDYKYGWQAH KAREPFVSSE NNPTKQSSSP FGLDLDGGDV SSKQPHLHLH 420
  421 SKQIDLPNIS QLLEKMQVSS DSDISDLDSL KFDAPLPSHM QLSFNLLKSR VETCDKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] PSI-BLAST 7.0 No description for 2uu9D was found.
    2 View Details [78..477] PSI-BLAST 68.0 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle