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Protein Overview: gi|14596009, gi|...

General Information:
Name(s) found: gi|20197945 [NCBI NR]
gi|18404301 [NCBI NR]
gi|17978801 [NCBI NR]
gi|14596009 [NCBI NR]
Description(s) found:
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  • gi|20197945|gb|AAD31587.2| translin-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18404301|ref|NP_565857.1| translin family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17978801|gb|AAL47394.1| translin-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14596009|gb|AAK68732.1| translin-like protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9SJK5) Translin-like protein [athaliana3702.FASTAC.txt]
  • translin-like protein [Arabidopsis thaliana]gi|17978801|gb|AAL47394.1| translin-like protein [Arabidopsis thaliana]gi|14596009|gb|AAK68732.1| translin-like protein [Arabidopsis thaliana]gi|18404301|ref|NP_565857.1| translin family protein [Arabidopsis [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Translin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • translin-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [ISS]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGDGQVSH SLEKQFESFR VQLEESAALR EQIRAVVMEI ESATRLIQAN LLLVHQSRPI  60
   61 PEVIEKAKEK IVDLKQYYGR LAEILEECPG QYYRYHGDWR SETQAVVSQL AFMHWLETGT 120
  121 LLVHTEAEEK LGLNSLEFGL ETEDYLTGIC FMSNDLPRYV VNRVTAGDYD CPRKVMNFLT 180
  181 DLHAAFRMLN LRNDFLRKKF DSMKYDLRRV EEVYYDVKIR GLISGGDPPG VQAVQGQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] PSI-BLAST 64.69897 Crystal Structure of human Translin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.3188629697616 bayes_pls_golite062009
  • binding
    		•  1.94480454487356 bayes_pls_golite062009
  • DNA binding
    		•  1.58937601934226 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.56664100418006 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.3845125644471 bayes_pls_golite062009
  • RNA binding
    		•  0.41002712924518 bayes_pls_golite062009
  • protein binding
    		•  0.335015582245911 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.12832953268809 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle