YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FIMB3_ARATH

General Information:
Name(s) found: FIMB3_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
SHOW ALL
  • Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 714 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: NONE FOUND
    Molecular Function: actin binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFVGVIVS DPWLQSQLTQ VELRSLNSKF VALKNQSGKV TLEDLPSVLV KVKSLSSSFK  60
   61 EKEIKEILGG LGSDYESDDD LDFESFLKVY LNLRDKAADK AGGGLKHSSS FLKAGTTTLH 120
  121 TINQSEKGSF VLHINRYLGD DPFLKQFLPL DPDSNDLYEL VKDGVLLCKL INIAVPGTID 180
  181 ERAINTKRVL NPWERNENHT LCLNSAKAVG CSVVNIGTQD LAEGRPHLVL GLISQLIKIQ 240
  241 LLADLSLKKM PQLVELVEDN EDIEEFLRLP PEKVLLKWMN FHLKKGGYKK TVGNFSSDLK 300
  301 DAQAYAYLLN VLAPEHCDPA TLNAEDDLER ANMVLEHAER MNCKRYLTAE EIVEGSSYLN 360
  361 LAFVAQIFHE RNGLSTDGRF SFAEMMTEDL QTCRDERCYR LWINSLGIES YVNNVFEDVR 420
  421 NGWILLEVVD KVYPGSVNWK QASKPPIKMP FRKVENCNQV VKIGKEMRFS LVNVAGNDIV 480
  481 QGNKKLILGF LWQLMRTHML QLLKSLRSRT RGKDMTDSEI ISWANRKVRI MGRKSQIESF 540
  541 KDKSLSSGLF FLDLLWAVEP RVVNWNLVTK GESDDEKRLN ATYIVSVARK LGCSVFLLPE 600
  601 DIVEVNQKMI LILTASIMYW SLQQQSSSSE SSSSSSDSSS THSTTTTCTS TCTSTDASPA 660
  661 PSVTGEDEVS SLNGEVSSLT IEEDNEVSSL TIEEDNDADI LSDITSISEE AANE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 23.69897 Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
    2 View Details [118..622] PSI-BLAST 115.0 Crystal structure of the actin-crosslinking core of Arabidopsis fimbrin
    3 View Details [623..714] PSI-BLAST 66.154902 Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • actin binding
    		•  7.50245214720686 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  6.48140000563569 bayes_pls_golite062009
  • actin filament binding
    		•  5.47084878097979 bayes_pls_golite062009
  • tubulin binding
    		•  4.22039137964246 bayes_pls_golite062009
  • microtubule binding
    		•  4.15537672860167 bayes_pls_golite062009
  • binding
    		•  2.8655705697659 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  2.57886434162184 bayes_pls_golite062009
  • protein binding
    		•  2.36488136094907 bayes_pls_golite062009
  • microtubule plus-end binding
    		•  2.0465241878708 bayes_pls_golite062009
  • structural constituent of muscle
    		•  1.32485442580942 bayes_pls_golite062009
  • structural molecule activity
    		•  1.00964022808548 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle