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Protein Overview: LHP1_ARATH

General Information:
Name(s) found: LHP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759046|dbj|BAB09568.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|16444951|dbj|BAB70689.1| TERMINAL FLOWER 2 [Arabidopsis thaliana] [NCBI NR]
  • gi|15238009|ref|NP_197271.1| TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding [Arabidopsis thaliana] [NCBI NR]
  • gi|115646754|gb|ABJ17106.1| At5g17690 [Arabidopsis thaliana] [NCBI NR]
  • gi|110810410|sp|Q946J8.2|LHP1_ARATH RecName: Full=Chromo domain-containing protein LHP1; AltName: Full=Protein LIKE HETEROCHROMATIN PROTEIN 1; AltName: Full=Protein TERMINAL FLOWER 2 [NCBI NR]
  • Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana GN=LHP1 PE=1 SV=2 [Swiss-Prot]
  • (Q9FN82) SIMILARITY to POLYCOMB protein (Terminal flower 2) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|16444951|dbj|BAB70689.1| TERMINAL FLOWER 2 [Arabidopsis thaliana]gi|15238009|ref|NP_197271.1| like heterochromatin protein (LHP1) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Like heterochromatin protein (LHP1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LHP1, TFL2 | TFL2 (TERMINAL FLOWER 2) | chr5:5827506-5829539 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • TFL2 (TERMINAL FLOWER 2); chromatin binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g17690 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • TERMINAL FLOWER 2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Protein LIKE HETEROCHROMATIN PROTEIN1 (LHP1) (Protein TERMINAL FLOWER 2) [nr-271106-contam.fasta]
  • | Symbols: TFL2, LHP1 | like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: euchromatin [IDA]
    nuclear heterochromatin [IDA]
    Biological Process: photoperiodism, flowering [IMP]
    [NOT]root development [IMP]
    negative regulation of gene expression, epigenetic [IMP]
    multidimensional cell growth [IMP]
    shoot morphogenesis [IMP]
    chromatin silencing [IEP][IMP]
    chromatin organization [IMP]
    photoperiodism [IMP]
    vernalization response [IMP]
    negative regulation of flower development [IMP]
    Molecular Function: DNA binding [IDA]
    methylated histone residue binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGASGAVKK KPQVLNEAGE AETAVETVGE SRKISGDGGF GSDDGGGGGG GGSGESILRE  60
   61 IGDDRPTEDG DEEEEEDEDE DDGGDEEDEE GEGEGGQEER PKLDEGFYEI EAIRRKRVRK 120
  121 GKVQYLIKWR GWPETANTWE PLENLQSIAD VIDAFEGSLK PGKPGRKRKR KYAGPHSQMK 180
  181 KKQRLTSTSH DATEKSDSST SLNNSSLPDI PDPLDLSGSS LLNRDVEAKN AYVSNQVEAN 240
  241 SGSVGMARQV RLIDNEKEYD PTLNELRGPV NNSNGAGCSQ GGGIGSEGDN VRPNGLLKVY 300
  301 PKELDKNSRF IGAKRRKSGS VKRFKQDGST SNNHTAPTDQ NLTPDLTTLD SFGRIARMGN 360
  361 EYPGVMENCN LSQKTKIEEL DITKILKPMS FTASVSDNVQ EVLVTFLALR SDGKEALVDN 420
  421 RFLKAHNPHL LIEFYEQHLK YNRTP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 9.30103 Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
    2 View Details [179..320] deduced N/A No confident structure predictions are available.
    3 View Details [321..445] FFAS03 1.27 Heterochromatin protein 1, HP1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.374364652893655 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.268337333010953 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle