| Protein: | LHP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 445 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
278.0 | [0..1] | [445..1] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MKGASGAVKK KPQVLNEAGE AETAVETVGE SRKISGDGGF GSDDGGGGGG GGSGESILRE 60
61 IGDDRPTEDG DEEEEEDEDE DDGGDEEDEE GEGEGGQEER PKLDEGFYEI EAIRRKRVRK 120
121 GKVQYLIKWR GWPETANTWE PLENLQSIAD VIDAFEGSLK PGKPGRKRKR KYAGPHSQ
|
| Detection Method: |  |
| Confidence: | 9.30103 |
| Match: | 2b2uA |
| Description: | Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.374364652893655 | bayes_pls_golite062009 |
|
Region A: Residues: [179-320] |
1 11 21 31 41 51
| | | | | |
1 MKKKQRLTST SHDATEKSDS STSLNNSSLP DIPDPLDLSG SSLLNRDVEA KNAYVSNQVE 60
61 ANSGSVGMAR QVRLIDNEKE YDPTLNELRG PVNNSNGAGC SQGGGIGSEG DNVRPNGLLK 120
121 VYPKELDKNS RFIGAKRRKS GS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [321-445] |
1 11 21 31 41 51
| | | | | |
1 VKRFKQDGST SNNHTAPTDQ NLTPDLTTLD SFGRIARMGN EYPGVMENCN LSQKTKIEEL 60
61 DITKILKPMS FTASVSDNVQ EVLVTFLALR SDGKEALVDN RFLKAHNPHL LIEFYEQHLK 120
121 YNRTP
|
| Detection Method: | |
| Confidence: | 1.27 |
| Match: | 1e0bA |
| Description: | Heterochromatin protein 1, HP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.268337333010953 | bayes_pls_golite062009 |
