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Protein Overview: VILI1_ARATH

General Information:
Name(s) found: VILI1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|20198093|gb|AAD23629.2| putative villin [Arabidopsis thaliana] [NCBI NR]
  • gi|18402176|ref|NP_029567.1| VLN1 (VILLIN-LIKE 1); actin binding / actin filament binding [Arabidopsis thaliana] [NCBI NR]
  • gi|147744599|sp|O81643.2|VILI1_ARATH RecName: Full=Villin-1 [NCBI NR]
  • Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2 [Swiss-Prot]
  • (Q9SIK8) Putative villin [athaliana3702.FASTAC.txt]
  • putative villin [Arabidopsis thaliana]gi|18402176|ref|NP_029567.1| villin 1 (VLN1) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Villin 1 (VLN1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATVLN1, VLN1 | VLN1 (VILLIN 1); actin binding | chr2:12751674-12756551 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • VLN1 (VILLIN 1); actin binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative villin [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VLN1, ATVLN1 | villin-like 1 | chr2:12744597-12749474 FORWARD LENGTH=909 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 909 amino acids

    Gene Ontology:
    Cellular Component: actin cytoskeleton [IDA]
    Biological Process: [NOT]barbed-end actin filament capping [IDA]
    negative regulation of actin filament depolymerization [IDA]
    [NOT]actin filament severing [IDA]
    cytoskeleton organization [ISS]
    [NOT]actin filament depolymerization [IDA]
    [NOT]actin nucleation [IDA]
    actin filament organization [IPI]
    Molecular Function: actin filament binding [IPI]
    actin binding [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLSKDIDS AFQGVGTKSG LEIWCVYNKQ LISIPKSSFG KFHSGNAYLV LRTFLRKIES  60
   61 PQYDIHYWLG IDANEVDSIL ASDKALDLDA ALGCCTVQYR EVQGQETEKF LSYFKPCIIP 120
  121 VEGKYSPKTG IAGETYQVTL LRCKGDHVVR VKEVPFLRSS LNHDDVFILD TASKVFLFAG 180
  181 CNSSTQEKAK AMEVVEYIKD NKHDGRCEVA TIEDGKFSGD SDAGEFWSFF GGYAPIPKLS 240
  241 SSTTQEQTQT PCAELFWIDT KGNLHPTGTS SLDKDMLEKN KCYMLDCHSE VFVWMGRNTS 300
  301 LTERKTSISS SEEFLRKEGR STTTSLVLLT EGLENARFRS FFNKWPQTVE SSLYNEGREK 360
  361 VAALFKQKGY DVEELPDEED DPLYTNCRDN LKVWRVDGDD VSLLSIPDQT KLFTGDCYLV 420
  421 QYKYTYKERT EHLLYVWIGC ESIQQDRADA ITNASAIVGT TKGESVLCHI YQGNEPSRFF 480
  481 PMFQSLVVFK GGLSRRYKVL LAEKEKIGEE YNENKASLFR VVGTSPRNMQ AIQVNLVATS 540
  541 LNSSYSYILQ YGASAFTWIG KLSSDSDHEV LDRMLYFLDT SCQPIYIREG NETDTFWNLL 600
  601 GGKSEYPKEK EMRKQIEEPH LFTCSCSSDV LKVKEIYNFV QDDLTTEDVF LLDCQSEVYV 660
  661 WIGSNSNIKS KEEALTLGLK FLEMDILEEG LTMRTPVYVV TEGHEPPFFT RFFEWVPEKA 720
  721 NMHGNSFERK LASLKGKKTS TKRSSGSQYR SQSKDNASRD LQSRSVSSNG SERGVSPCSS 780
  781 EKLLSLSSAE DMTNSSNSTP VVKKLFSESL LVDPNDGVAR QESSSKSDIS KQKPRVGINS 840
  841 DLSSLESLAY SYEQLRVDSQ KPVTDIDATR REAYLTEKEF EERFGMAKSE FYALPKWKQN 900
  901 KLKISLHLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..735] PSI-BLAST 1000.0 No description for 2fghA was found.
    2 View Details [736..830] deduced N/A No confident structure predictions are available.
    3 View Details [831..909] PSI-BLAST 23.522879 Solution structure of the Villin headpiece domain of human actin-binding LIM protein homologue (KIAA0843 protein)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • actin binding
    		•  5.53385110100387 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  4.11554260532242 bayes_pls_golite062009
  • binding
    		•  2.42849959483419 bayes_pls_golite062009
  • protein binding
    		•  1.84182032292601 bayes_pls_golite062009
  • PDZ domain binding
    		•  0.351516306039841 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle