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Protein Overview: gi|39545894, gi|...

General Information:
Name(s) found: gi|7268828 [NCBI NR]
gi|5738378 [NCBI NR]
gi|39545894 [NCBI NR]
gi|25407575 [NCBI NR]
gi|20466494 [NCBI NR]
gi|18700218 [NCBI NR]
gi|15235379 [NCBI NR]
gi|14326523 [NCBI NR]
Description(s) found:
Found 19 descriptions.
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  • gi|7268828|emb|CAB79033.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|5738378|emb|CAB52821.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|39545894|gb|AAR28010.1| TFIIE-beta 2 [Arabidopsis thaliana] [NCBI NR]
  • pir||G85230 hypothetical protein AT4g20330 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20466494|gb|AAM20564.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18700218|gb|AAL77719.1| AT4g20330/F9F13_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|15235379|ref|NP_193766.1| transcription initiation factor-related [Arabidopsis thaliana] [NCBI NR]
  • gi|14326523|gb|AAK60306.1|AF385715_1 AT4g20330/F9F13_2 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 286 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIIE complex [IEA]
    Biological Process: transcription initiation from RNA polymerase II promoter [IEA]
    Molecular Function: RNA polymerase II transcription factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKEQLDKF NKQQVKCQST LSSIASSRER TSSSRQNVPL PAAITQKKPD AAPVKFSSDT  60
   61 ERLQNINNIR KAPVGAQIKR VIDLLYERRL ALTPEQINEW CHVDMHANKA VFDSLRKNPK 120
  121 AHYDGRRFSY KATHDVNDKN QLLSLVRKYL DGIAVVDLKD AYPNVMEDLK ALSASGDIYL 180
  181 LSNSQEDIAY PNDFKCEIKV DDEFKALFRD INIPNDMLDV EKELLKIGLK PATNTAERRA 240
  241 AAQTHGISNK PKDKKKKKQE ISKRTKLTNA HLPELFQNLN GSSSRN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 19.522879 The central core domain of TFIIE beta
    2 View Details [126..286] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle