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Protein Overview: ATB40_ARATH

General Information:
Name(s) found: ATB40_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 217 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    response to auxin stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL  60
   61 TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW FQNRRARWKN KRLEEEYNKL 120
  121 KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP 180
  181 FFGDYKVGDD GDDYDHLFYP VPENSYIDEA EWMSLYI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] PSI-BLAST 21.69897 Ultrabithorax (ubx) homeodomain
    2 View Details [131..217] MSA 2.033996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle