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Protein Overview: CDT1A_ARATH

General Information:
Name(s) found: CDT1A_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 571 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    chloroplast [IDA]
    Biological Process: DNA replication [IMP]
    chloroplast organization [IMP]
    Molecular Function: protein binding [IPI]
    cyclin-dependent protein kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL  60
   61 SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK SSNKNAEKEK LPEKYENLGK 120
  121 FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH 180
  181 DETTCCMKPD LHVTLNADAV EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP 240
  241 LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI 300
  301 NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST 360
  361 PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS LNFDSYPEDE RTMDFTDDIP 420
  421 IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN 480
  481 VIHYLIQSIR RWVITKEELV HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD 540
  541 VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] deduced N/A No confident structure predictions are available.
    2 View Details [81..270] PSI-BLAST 35.39794 Strucure of Geminin-Cdt1 complex
    3 View Details [271..452] MSA 6.169997 View MSA. No confident structure predictions are available.
    4 View Details [453..571] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle